miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19738 5' -61.4 NC_004687.1 + 148814 0.67 0.638165
Target:  5'- cGCGCuacuUCGCCGaccagGCCGCGcgugaggagcgcaAGGCcgAGCGg -3'
miRNA:   3'- -CGCG----AGUGGCa----CGGCGC-------------UCCG--UCGCa -5'
19738 5' -61.4 NC_004687.1 + 94852 0.68 0.56063
Target:  5'- cGCGCUggcCACCGagGCCGCGAucGGCAaggaGCuGUg -3'
miRNA:   3'- -CGCGA---GUGGCa-CGGCGCU--CCGU----CG-CA- -5'
19738 5' -61.4 NC_004687.1 + 124525 0.68 0.56063
Target:  5'- gGUGCacaACCGUGCCGaCGAGGacgaCGGCa- -3'
miRNA:   3'- -CGCGag-UGGCACGGC-GCUCC----GUCGca -5'
19738 5' -61.4 NC_004687.1 + 95828 0.68 0.570346
Target:  5'- gGCGCUCGuuUUGagGCCGCuucGGCGGCGUu -3'
miRNA:   3'- -CGCGAGU--GGCa-CGGCGcu-CCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 90092 0.67 0.588914
Target:  5'- cGUGCUucguuucCGCCGUGCgGCuGGGGCuggggaGGCGg -3'
miRNA:   3'- -CGCGA-------GUGGCACGgCG-CUCCG------UCGCa -5'
19738 5' -61.4 NC_004687.1 + 106035 0.67 0.599715
Target:  5'- aGCGCUCGCUGUcGCC-UGAGG-AGCu- -3'
miRNA:   3'- -CGCGAGUGGCA-CGGcGCUCCgUCGca -5'
19738 5' -61.4 NC_004687.1 + 24903 0.67 0.599715
Target:  5'- gGCuGCaaccaUCGCCGc-CCGCGAGGCuGCGa -3'
miRNA:   3'- -CG-CG-----AGUGGCacGGCGCUCCGuCGCa -5'
19738 5' -61.4 NC_004687.1 + 2776 0.67 0.619415
Target:  5'- gGUGCUgGCC-UGCCGCaccgcgcccGGCGGCGa -3'
miRNA:   3'- -CGCGAgUGGcACGGCGcu-------CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 63875 0.67 0.619415
Target:  5'- gGCGCggccUACCGUGaCCaCGAccacGGCGGCGa -3'
miRNA:   3'- -CGCGa---GUGGCAC-GGcGCU----CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 60595 0.68 0.558692
Target:  5'- cGCGCUgGCCGgucuggucuccgGCauggaGCGcaaGGGCGGCGUc -3'
miRNA:   3'- -CGCGAgUGGCa-----------CGg----CGC---UCCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 130464 0.68 0.541341
Target:  5'- uGCGCUgGCCGcgcUGCCGC-AGGUcgcacgcacGGCGa -3'
miRNA:   3'- -CGCGAgUGGC---ACGGCGcUCCG---------UCGCa -5'
19738 5' -61.4 NC_004687.1 + 27552 0.69 0.522279
Target:  5'- cGCuaCUCGCCGUggagggcaacgGUCGCGGcGGCGGCGa -3'
miRNA:   3'- -CGc-GAGUGGCA-----------CGGCGCU-CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 114961 0.77 0.159286
Target:  5'- cUGCUCGCCGUGCCccGCGAggacgcGGCAGCa- -3'
miRNA:   3'- cGCGAGUGGCACGG--CGCU------CCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 23895 0.76 0.198194
Target:  5'- -aGCaCACCGUGCugCGCGAGGaCGGCGUg -3'
miRNA:   3'- cgCGaGUGGCACG--GCGCUCC-GUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 78428 0.74 0.250882
Target:  5'- aGCGCUCGgccuucCCGgGCCGCuacgccgcacagGAGGCGGCGg -3'
miRNA:   3'- -CGCGAGU------GGCaCGGCG------------CUCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 84978 0.74 0.268801
Target:  5'- uGCGCUCACCGagccGCCGCGcaccgccGaGCAGCGc -3'
miRNA:   3'- -CGCGAGUGGCa---CGGCGCu------C-CGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 79106 0.7 0.449009
Target:  5'- gGCGCcgggCACCGUGgcaCCGgGucuGGGCGGCGg -3'
miRNA:   3'- -CGCGa---GUGGCAC---GGCgC---UCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 73742 0.69 0.475858
Target:  5'- gGCGuCUCGCCGaUGaCCG-GcGGCAGCGg -3'
miRNA:   3'- -CGC-GAGUGGC-AC-GGCgCuCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 100144 0.69 0.475858
Target:  5'- -gGCUCAgCGUGCUGCuguGCAGCGg -3'
miRNA:   3'- cgCGAGUgGCACGGCGcucCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 68199 0.69 0.494193
Target:  5'- aGCGC-CACU-UGCaUGCGAGGCGGaCGUg -3'
miRNA:   3'- -CGCGaGUGGcACG-GCGCUCCGUC-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.