miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19739 3' -53.9 NC_004687.1 + 33622 0.66 0.95699
Target:  5'- aUGGUGGCCCac---GGUGUGGgcGCCu -3'
miRNA:   3'- -AUCGCCGGGaccaaCUACACUaaCGG- -5'
19739 3' -53.9 NC_004687.1 + 135813 0.66 0.95699
Target:  5'- cAGCGGaggCUGGUUGGUGUaccgaGCCu -3'
miRNA:   3'- aUCGCCgg-GACCAACUACAcuaa-CGG- -5'
19739 3' -53.9 NC_004687.1 + 20624 0.66 0.953008
Target:  5'- cGGCuGGUgaccgacaucgaUCUGG-UGAUGUGGUUGgCCg -3'
miRNA:   3'- aUCG-CCG------------GGACCaACUACACUAAC-GG- -5'
19739 3' -53.9 NC_004687.1 + 38204 0.66 0.948784
Target:  5'- gGGUGccGCCCUGGUUGAcGaacuccgGGUUGgCCa -3'
miRNA:   3'- aUCGC--CGGGACCAACUaCa------CUAAC-GG- -5'
19739 3' -53.9 NC_004687.1 + 93553 0.66 0.944316
Target:  5'- --cCGGCCUcGGUUGAcgccGUGAUgcucuUGCCg -3'
miRNA:   3'- aucGCCGGGaCCAACUa---CACUA-----ACGG- -5'
19739 3' -53.9 NC_004687.1 + 24330 0.66 0.939601
Target:  5'- cUGGCGGUacuguuccagcgCCUGGUcGAcGUGGaugUUGCCc -3'
miRNA:   3'- -AUCGCCG------------GGACCAaCUaCACU---AACGG- -5'
19739 3' -53.9 NC_004687.1 + 107423 0.66 0.939601
Target:  5'- --cCGGCCUuggGGUUGuagGUGAU-GCCg -3'
miRNA:   3'- aucGCCGGGa--CCAACua-CACUAaCGG- -5'
19739 3' -53.9 NC_004687.1 + 144144 0.66 0.939601
Target:  5'- gUGGCGGUcaugucgagcuCCUGGUcuGUGUGGgugUGUCu -3'
miRNA:   3'- -AUCGCCG-----------GGACCAacUACACUa--ACGG- -5'
19739 3' -53.9 NC_004687.1 + 52914 0.67 0.929953
Target:  5'- cGGCGGUCCUGGacuucaucgaccacGGUGUGAguccgGCg -3'
miRNA:   3'- aUCGCCGGGACCaa------------CUACACUaa---CGg -5'
19739 3' -53.9 NC_004687.1 + 19908 0.67 0.92942
Target:  5'- cUGGCGGgCgaGGUgcaGAUGUGGcUGCg -3'
miRNA:   3'- -AUCGCCgGgaCCAa--CUACACUaACGg -5'
19739 3' -53.9 NC_004687.1 + 31213 0.67 0.923953
Target:  5'- cGGCGGUgCUGG-UGAUuUGuucaGUUGCCu -3'
miRNA:   3'- aUCGCCGgGACCaACUAcAC----UAACGG- -5'
19739 3' -53.9 NC_004687.1 + 24681 0.67 0.923953
Target:  5'- gUGGCgGGCCCUGGccGGUGUcGAg-GUCa -3'
miRNA:   3'- -AUCG-CCGGGACCaaCUACA-CUaaCGG- -5'
19739 3' -53.9 NC_004687.1 + 120935 0.67 0.918233
Target:  5'- cAGCGGCCCcGG-UGggGUccucUGCCg -3'
miRNA:   3'- aUCGCCGGGaCCaACuaCAcua-ACGG- -5'
19739 3' -53.9 NC_004687.1 + 52536 0.67 0.906043
Target:  5'- gAGCGGaUCUGGUgGGUgGUGAcgaacUUGCCg -3'
miRNA:   3'- aUCGCCgGGACCAaCUA-CACU-----AACGG- -5'
19739 3' -53.9 NC_004687.1 + 31758 0.68 0.899576
Target:  5'- gAGCGGaCgCCUGGacgUUGAaguggcgcuguuUGUGGUUGCg -3'
miRNA:   3'- aUCGCC-G-GGACC---AACU------------ACACUAACGg -5'
19739 3' -53.9 NC_004687.1 + 91885 0.68 0.892865
Target:  5'- gAG-GGCCCgGcGUagucgugGGUGUGGUUGCCc -3'
miRNA:   3'- aUCgCCGGGaC-CAa------CUACACUAACGG- -5'
19739 3' -53.9 NC_004687.1 + 94099 0.68 0.878726
Target:  5'- gGGCuGGCCCUGGgucggcgUGccaGUGAU-GCCc -3'
miRNA:   3'- aUCG-CCGGGACCa------ACua-CACUAaCGG- -5'
19739 3' -53.9 NC_004687.1 + 100880 0.69 0.863662
Target:  5'- -cGCGGCCCaGGUcg--GUGAUccGCCa -3'
miRNA:   3'- auCGCCGGGaCCAacuaCACUAa-CGG- -5'
19739 3' -53.9 NC_004687.1 + 69089 0.69 0.847719
Target:  5'- -cGUGGUCUc-GUUGAUGcUGGUUGCCa -3'
miRNA:   3'- auCGCCGGGacCAACUAC-ACUAACGG- -5'
19739 3' -53.9 NC_004687.1 + 136177 0.69 0.8469
Target:  5'- aUGGCGGucauuucggggcuCCUUGGUguGUGUGAgUGCCu -3'
miRNA:   3'- -AUCGCC-------------GGGACCAacUACACUaACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.