miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19739 5' -63.7 NC_004687.1 + 148228 1.04 0.001314
Target:  5'- uACGGCGACGAGGACGGCCAGGGCCAUu -3'
miRNA:   3'- -UGCCGCUGCUCCUGCCGGUCCCGGUA- -5'
19739 5' -63.7 NC_004687.1 + 130183 0.87 0.021182
Target:  5'- gGCGGUGcCGAGGACGGCgAGGGCCAg -3'
miRNA:   3'- -UGCCGCuGCUCCUGCCGgUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 21002 0.82 0.055622
Target:  5'- uACGGCGuCGAGGccaAUGGCCAGGGCCc- -3'
miRNA:   3'- -UGCCGCuGCUCC---UGCCGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 34527 0.77 0.110661
Target:  5'- gACGuCGACGAGGACGGCCccgAGGGuCCGg -3'
miRNA:   3'- -UGCcGCUGCUCCUGCCGG---UCCC-GGUa -5'
19739 5' -63.7 NC_004687.1 + 73977 0.75 0.160301
Target:  5'- cGCGGUGGCcgGAGuGAcCGGCCAGGGCgGUa -3'
miRNA:   3'- -UGCCGCUG--CUC-CU-GCCGGUCCCGgUA- -5'
19739 5' -63.7 NC_004687.1 + 25489 0.73 0.218706
Target:  5'- cACGaGUGACGucGucaccgugcgauGCGGCCAGGGCCAg -3'
miRNA:   3'- -UGC-CGCUGCucC------------UGCCGGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 11425 0.73 0.218706
Target:  5'- cCGGCGAcaacgcCGAGGACcuGGCCGaguGGGCCAc -3'
miRNA:   3'- uGCCGCU------GCUCCUG--CCGGU---CCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 116389 0.73 0.229161
Target:  5'- cCGGCGACGccAGG-C-GCCGGGGCCAc -3'
miRNA:   3'- uGCCGCUGC--UCCuGcCGGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 30906 0.73 0.229161
Target:  5'- cGCGGCGuCGAGGGUGGUCA-GGCCGg -3'
miRNA:   3'- -UGCCGCuGCUCCUGCCGGUcCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 102511 0.72 0.245632
Target:  5'- gACGGgGGCGGGcGAUGGCCGcgauGGCCAg -3'
miRNA:   3'- -UGCCgCUGCUC-CUGCCGGUc---CCGGUa -5'
19739 5' -63.7 NC_004687.1 + 70949 0.72 0.25715
Target:  5'- cGCGGCGGCucgguGAGcGcACGGUCAGGGUCGa -3'
miRNA:   3'- -UGCCGCUG-----CUC-C-UGCCGGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 44838 0.71 0.27463
Target:  5'- -aGGCGGCGAucGCGGCCAgcucgccGGGCCGg -3'
miRNA:   3'- ugCCGCUGCUccUGCCGGU-------CCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 96181 0.71 0.27525
Target:  5'- cGCGG-GACGGGGAgGGUacaGGGGCCc- -3'
miRNA:   3'- -UGCCgCUGCUCCUgCCGg--UCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 93325 0.71 0.279617
Target:  5'- cAUGGCGGC-AGGcacuugucccgaguGCGGCCAGGcGCCGg -3'
miRNA:   3'- -UGCCGCUGcUCC--------------UGCCGGUCC-CGGUa -5'
19739 5' -63.7 NC_004687.1 + 34983 0.71 0.281506
Target:  5'- -aGGCGGCaGAGGACcccaCCGGGGCCGc -3'
miRNA:   3'- ugCCGCUG-CUCCUGcc--GGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 56579 0.71 0.281506
Target:  5'- gGCGGCGGCGAGcccGACGucgaacaCCGGGGCUAc -3'
miRNA:   3'- -UGCCGCUGCUC---CUGCc------GGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 51228 0.7 0.321413
Target:  5'- gGCGGCGGCGAuGuCGGUCAGcGCCGa -3'
miRNA:   3'- -UGCCGCUGCUcCuGCCGGUCcCGGUa -5'
19739 5' -63.7 NC_004687.1 + 72451 0.7 0.321413
Target:  5'- cACGGUGACGcaccuGGACGGCCAGcagcucGGCa-- -3'
miRNA:   3'- -UGCCGCUGCu----CCUGCCGGUC------CCGgua -5'
19739 5' -63.7 NC_004687.1 + 48787 0.7 0.324219
Target:  5'- -gGGCucGACGAGGACgucggcgccggacggGGCCAccuGGGCCAg -3'
miRNA:   3'- ugCCG--CUGCUCCUG---------------CCGGU---CCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 110648 0.7 0.328462
Target:  5'- cCGGCGugGuGGACGgaGCCGGaguGGCCGa -3'
miRNA:   3'- uGCCGCugCuCCUGC--CGGUC---CCGGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.