miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19739 5' -63.7 NC_004687.1 + 106279 0.67 0.492107
Target:  5'- gAUGGCGAuggcCGGGGugGaGCCGGuGGUCu- -3'
miRNA:   3'- -UGCCGCU----GCUCCugC-CGGUC-CCGGua -5'
19739 5' -63.7 NC_004687.1 + 60941 0.69 0.380963
Target:  5'- uCGGCGugGccccGACGGCCAGcGcGCCGUu -3'
miRNA:   3'- uGCCGCugCuc--CUGCCGGUC-C-CGGUA- -5'
19739 5' -63.7 NC_004687.1 + 18159 0.69 0.396958
Target:  5'- cCGGUGcCGGuGugGGCCGGGGCUc- -3'
miRNA:   3'- uGCCGCuGCUcCugCCGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 104930 0.69 0.396958
Target:  5'- uCGGCGugGGauGGG-GGCCGGGGCa-- -3'
miRNA:   3'- uGCCGCugCU--CCUgCCGGUCCCGgua -5'
19739 5' -63.7 NC_004687.1 + 53778 0.68 0.430211
Target:  5'- gGCGGCGAagaAGGcaGCGGCCAaGGCCc- -3'
miRNA:   3'- -UGCCGCUgc-UCC--UGCCGGUcCCGGua -5'
19739 5' -63.7 NC_004687.1 + 23904 0.68 0.456196
Target:  5'- uGCuGCG-CGAGGACGGCguGGaGaCCAUc -3'
miRNA:   3'- -UGcCGCuGCUCCUGCCGguCC-C-GGUA- -5'
19739 5' -63.7 NC_004687.1 + 125221 0.68 0.456196
Target:  5'- uCGGagaGaACGAGGACGGCCAucugacacGGGuCCGc -3'
miRNA:   3'- uGCCg--C-UGCUCCUGCCGGU--------CCC-GGUa -5'
19739 5' -63.7 NC_004687.1 + 15105 0.67 0.465044
Target:  5'- uACGGCGACGcGGuC-GCCAaGGCCAc -3'
miRNA:   3'- -UGCCGCUGCuCCuGcCGGUcCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 19201 0.67 0.483003
Target:  5'- cACGGCcucGACGAGGugGucgaccugguccGCCAGacgcaGGCCAg -3'
miRNA:   3'- -UGCCG---CUGCUCCugC------------CGGUC-----CCGGUa -5'
19739 5' -63.7 NC_004687.1 + 32096 0.69 0.380963
Target:  5'- cGCGuGCG-CGcGGAaggUGGCCAGGGCCc- -3'
miRNA:   3'- -UGC-CGCuGCuCCU---GCCGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 44867 0.69 0.365404
Target:  5'- cCGGUGGCGGGcaGAuCGGUCAGGGCgAg -3'
miRNA:   3'- uGCCGCUGCUC--CU-GCCGGUCCCGgUa -5'
19739 5' -63.7 NC_004687.1 + 115388 0.69 0.365404
Target:  5'- -gGGCGAuCGAGGcccgaggagAUGGCCGcgcGGGCCAa -3'
miRNA:   3'- ugCCGCU-GCUCC---------UGCCGGU---CCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 73977 0.75 0.160301
Target:  5'- cGCGGUGGCcgGAGuGAcCGGCCAGGGCgGUa -3'
miRNA:   3'- -UGCCGCUG--CUC-CU-GCCGGUCCCGgUA- -5'
19739 5' -63.7 NC_004687.1 + 11425 0.73 0.218706
Target:  5'- cCGGCGAcaacgcCGAGGACcuGGCCGaguGGGCCAc -3'
miRNA:   3'- uGCCGCU------GCUCCUG--CCGGU---CCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 96181 0.71 0.27525
Target:  5'- cGCGG-GACGGGGAgGGUacaGGGGCCc- -3'
miRNA:   3'- -UGCCgCUGCUCCUgCCGg--UCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 93325 0.71 0.279617
Target:  5'- cAUGGCGGC-AGGcacuugucccgaguGCGGCCAGGcGCCGg -3'
miRNA:   3'- -UGCCGCUGcUCC--------------UGCCGGUCC-CGGUa -5'
19739 5' -63.7 NC_004687.1 + 34983 0.71 0.281506
Target:  5'- -aGGCGGCaGAGGACcccaCCGGGGCCGc -3'
miRNA:   3'- ugCCGCUG-CUCCUGcc--GGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 56579 0.71 0.281506
Target:  5'- gGCGGCGGCGAGcccGACGucgaacaCCGGGGCUAc -3'
miRNA:   3'- -UGCCGCUGCUC---CUGCc------GGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 72451 0.7 0.321413
Target:  5'- cACGGUGACGcaccuGGACGGCCAGcagcucGGCa-- -3'
miRNA:   3'- -UGCCGCUGCu----CCUGCCGGUC------CCGgua -5'
19739 5' -63.7 NC_004687.1 + 28212 0.7 0.35779
Target:  5'- uACGGgGGCGAgcaGGACGGCUggcGGcGCCAg -3'
miRNA:   3'- -UGCCgCUGCU---CCUGCCGGu--CC-CGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.