miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19739 5' -63.7 NC_004687.1 + 551 0.66 0.538721
Target:  5'- gGCaGCGGCGGGGGCGGgguGGGCa-- -3'
miRNA:   3'- -UGcCGCUGCUCCUGCCgguCCCGgua -5'
19739 5' -63.7 NC_004687.1 + 4583 0.66 0.529266
Target:  5'- uGCGGCGGCgcaccucggggGAGGACugaugaacuGGCCAGcGGUCc- -3'
miRNA:   3'- -UGCCGCUG-----------CUCCUG---------CCGGUC-CCGGua -5'
19739 5' -63.7 NC_004687.1 + 5472 0.66 0.538721
Target:  5'- uCGaaGACGAGGACGGCgAcgucuucuGGGCCu- -3'
miRNA:   3'- uGCcgCUGCUCCUGCCGgU--------CCCGGua -5'
19739 5' -63.7 NC_004687.1 + 7004 0.67 0.500367
Target:  5'- -aGGCGACGAGuACaagcuguGGCCgaaacaguGGGGCCAg -3'
miRNA:   3'- ugCCGCUGCUCcUG-------CCGG--------UCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 11425 0.73 0.218706
Target:  5'- cCGGCGAcaacgcCGAGGACcuGGCCGaguGGGCCAc -3'
miRNA:   3'- uGCCGCU------GCUCCUG--CCGGU---CCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 14617 0.67 0.510546
Target:  5'- gACGGCGGCaAGaccAUGcGUCAGGGCCAc -3'
miRNA:   3'- -UGCCGCUGcUCc--UGC-CGGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 15105 0.67 0.465044
Target:  5'- uACGGCGACGcGGuC-GCCAaGGCCAc -3'
miRNA:   3'- -UGCCGCUGCuCCuGcCGGUcCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 16104 0.66 0.557798
Target:  5'- cACGGUGuAUGucG-UGGUCAGGGCCAc -3'
miRNA:   3'- -UGCCGC-UGCucCuGCCGGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 16666 0.67 0.519873
Target:  5'- gUGGCGACGAGGuCGGaCAGGucGCuCAc -3'
miRNA:   3'- uGCCGCUGCUCCuGCCgGUCC--CG-GUa -5'
19739 5' -63.7 NC_004687.1 + 16739 0.66 0.574162
Target:  5'- uGCGcGCGACGAacuugaGG-UGGCCguugggggucagguAGGGCCAg -3'
miRNA:   3'- -UGC-CGCUGCU------CCuGCCGG--------------UCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 18159 0.69 0.396958
Target:  5'- cCGGUGcCGGuGugGGCCGGGGCUc- -3'
miRNA:   3'- uGCCGCuGCUcCugCCGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 19201 0.67 0.483003
Target:  5'- cACGGCcucGACGAGGugGucgaccugguccGCCAGacgcaGGCCAg -3'
miRNA:   3'- -UGCCG---CUGCUCCugC------------CGGUC-----CCGGUa -5'
19739 5' -63.7 NC_004687.1 + 19616 0.66 0.538721
Target:  5'- cGCGGCgGGCcuGGACGuCCuGGGCCGg -3'
miRNA:   3'- -UGCCG-CUGcuCCUGCcGGuCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 20195 0.68 0.447439
Target:  5'- cACGGCccggcccagGACGAuaggGGAUGGCCAcGGcGCCGa -3'
miRNA:   3'- -UGCCG---------CUGCU----CCUGCCGGU-CC-CGGUa -5'
19739 5' -63.7 NC_004687.1 + 20493 0.67 0.483003
Target:  5'- -aGGUGuCGuucuuccGGuCGGCCAGGGCCu- -3'
miRNA:   3'- ugCCGCuGCu------CCuGCCGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 21002 0.82 0.055622
Target:  5'- uACGGCGuCGAGGccaAUGGCCAGGGCCc- -3'
miRNA:   3'- -UGCCGCuGCUCC---UGCCGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 22209 0.66 0.577061
Target:  5'- -aGGuCGugGGccacauGGugGGCCAGGGUUg- -3'
miRNA:   3'- ugCC-GCugCU------CCugCCGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 23904 0.68 0.456196
Target:  5'- uGCuGCG-CGAGGACGGCguGGaGaCCAUc -3'
miRNA:   3'- -UGcCGCuGCUCCUGCCGguCC-C-GGUA- -5'
19739 5' -63.7 NC_004687.1 + 25489 0.73 0.218706
Target:  5'- cACGaGUGACGucGucaccgugcgauGCGGCCAGGGCCAg -3'
miRNA:   3'- -UGC-CGCUGCucC------------UGCCGGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 25577 0.67 0.492107
Target:  5'- cAUGGaCGACGAuGAgGGCU-GGGCCAa -3'
miRNA:   3'- -UGCC-GCUGCUcCUgCCGGuCCCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.