Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19740 | 5' | -51.5 | NC_004687.1 | + | 97618 | 0.66 | 0.977748 |
Target: 5'- cGCUUGUGUucACGCAgguggccGUACUUGGCGu- -3' miRNA: 3'- aUGAACGCG--UGCGU-------CAUGAGCUGUua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 48208 | 0.66 | 0.984498 |
Target: 5'- aGCUUGCGgGCGU---ACUCGACc-- -3' miRNA: 3'- aUGAACGCgUGCGucaUGAGCUGuua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 148498 | 0.66 | 0.984498 |
Target: 5'- aGCUUGUcCugGCAGgcCUUGACGc- -3' miRNA: 3'- aUGAACGcGugCGUCauGAGCUGUua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 103247 | 0.66 | 0.984498 |
Target: 5'- gGCUUGCgGCccggacgauuaGgGCGGUGCUCGucGCAGUa -3' miRNA: 3'- aUGAACG-CG-----------UgCGUCAUGAGC--UGUUA- -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 90458 | 0.66 | 0.982518 |
Target: 5'- gGCUUGUccuGguCGguGUGCUCGAUg-- -3' miRNA: 3'- aUGAACG---CguGCguCAUGAGCUGuua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 29489 | 0.66 | 0.982518 |
Target: 5'- -cCUUGCGCAuCGCGaucuccauCUCGGCGAUg -3' miRNA: 3'- auGAACGCGU-GCGUcau-----GAGCUGUUA- -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 80433 | 0.66 | 0.980353 |
Target: 5'- ---cUGCGCcugcugcuGCGCGGccUGCUCGGCGGUc -3' miRNA: 3'- augaACGCG--------UGCGUC--AUGAGCUGUUA- -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 9859 | 0.66 | 0.980353 |
Target: 5'- gACcUG-GCGCGCGGU-CUCGGCGu- -3' miRNA: 3'- aUGaACgCGUGCGUCAuGAGCUGUua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 149914 | 0.66 | 0.977994 |
Target: 5'- ---aUGCGCAgCGCGGc-CUCGGCAGc -3' miRNA: 3'- augaACGCGU-GCGUCauGAGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 92121 | 0.66 | 0.984498 |
Target: 5'- gUGgUUGCGguCGcCGGUGCcCGACGAc -3' miRNA: 3'- -AUgAACGCguGC-GUCAUGaGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 48760 | 0.66 | 0.985241 |
Target: 5'- gACUUGcCGCA-GCAGcuggaccucccgggGCUCGACGAg -3' miRNA: 3'- aUGAAC-GCGUgCGUCa-------------UGAGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 142824 | 0.66 | 0.986303 |
Target: 5'- cGCgaGCGCAgCGCGGUG-UUGGCGAa -3' miRNA: 3'- aUGaaCGCGU-GCGUCAUgAGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 132038 | 0.66 | 0.977994 |
Target: 5'- ----cGCaGCACGguGUGCUCGGgAAc -3' miRNA: 3'- augaaCG-CGUGCguCAUGAGCUgUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 66734 | 0.66 | 0.977994 |
Target: 5'- cUACaUGC-CugGCAuGUACUCGGCGc- -3' miRNA: 3'- -AUGaACGcGugCGU-CAUGAGCUGUua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 86024 | 0.66 | 0.980353 |
Target: 5'- cGCcUGCuGCGCGaCA-UGCUCGACAAg -3' miRNA: 3'- aUGaACG-CGUGC-GUcAUGAGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 24159 | 0.67 | 0.962998 |
Target: 5'- ----cGUGCGCGCGGUGCUCucgGACc-- -3' miRNA: 3'- augaaCGCGUGCGUCAUGAG---CUGuua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 117222 | 0.67 | 0.969669 |
Target: 5'- aGCUUGCGCucgAUGCGGUcguAgUCGGCGu- -3' miRNA: 3'- aUGAACGCG---UGCGUCA---UgAGCUGUua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 79392 | 0.67 | 0.962998 |
Target: 5'- gGCUUGCGCAacgGCAGcaGCUCGucCGGUg -3' miRNA: 3'- aUGAACGCGUg--CGUCa-UGAGCu-GUUA- -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 136357 | 0.67 | 0.972661 |
Target: 5'- aGCUcGCGCcCGguGUGUUCGGCAGc -3' miRNA: 3'- aUGAaCGCGuGCguCAUGAGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 48257 | 0.67 | 0.969669 |
Target: 5'- gGCcggUGCGCACGUAGUaguccagauGCUCG-CGGa -3' miRNA: 3'- aUGa--ACGCGUGCGUCA---------UGAGCuGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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