miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19740 5' -51.5 NC_004687.1 + 9859 0.66 0.980353
Target:  5'- gACcUG-GCGCGCGGU-CUCGGCGu- -3'
miRNA:   3'- aUGaACgCGUGCGUCAuGAGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 24159 0.67 0.962998
Target:  5'- ----cGUGCGCGCGGUGCUCucgGACc-- -3'
miRNA:   3'- augaaCGCGUGCGUCAUGAG---CUGuua -5'
19740 5' -51.5 NC_004687.1 + 24904 0.68 0.93707
Target:  5'- cGCUcgGCGUcCGuCAGcUGCUCGACGAUg -3'
miRNA:   3'- aUGAa-CGCGuGC-GUC-AUGAGCUGUUA- -5'
19740 5' -51.5 NC_004687.1 + 29489 0.66 0.982518
Target:  5'- -cCUUGCGCAuCGCGaucuccauCUCGGCGAUg -3'
miRNA:   3'- auGAACGCGU-GCGUcau-----GAGCUGUUA- -5'
19740 5' -51.5 NC_004687.1 + 48208 0.66 0.984498
Target:  5'- aGCUUGCGgGCGU---ACUCGACc-- -3'
miRNA:   3'- aUGAACGCgUGCGucaUGAGCUGuua -5'
19740 5' -51.5 NC_004687.1 + 48257 0.67 0.969669
Target:  5'- gGCcggUGCGCACGUAGUaguccagauGCUCG-CGGa -3'
miRNA:   3'- aUGa--ACGCGUGCGUCA---------UGAGCuGUUa -5'
19740 5' -51.5 NC_004687.1 + 48760 0.66 0.985241
Target:  5'- gACUUGcCGCA-GCAGcuggaccucccgggGCUCGACGAg -3'
miRNA:   3'- aUGAAC-GCGUgCGUCa-------------UGAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 49599 0.7 0.880582
Target:  5'- gACUggUGCGguCGaAGUACUCGGCAGc -3'
miRNA:   3'- aUGA--ACGCguGCgUCAUGAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 66734 0.66 0.977994
Target:  5'- cUACaUGC-CugGCAuGUACUCGGCGc- -3'
miRNA:   3'- -AUGaACGcGugCGU-CAUGAGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 79392 0.67 0.962998
Target:  5'- gGCUUGCGCAacgGCAGcaGCUCGucCGGUg -3'
miRNA:   3'- aUGAACGCGUg--CGUCa-UGAGCu-GUUA- -5'
19740 5' -51.5 NC_004687.1 + 80433 0.66 0.980353
Target:  5'- ---cUGCGCcugcugcuGCGCGGccUGCUCGGCGGUc -3'
miRNA:   3'- augaACGCG--------UGCGUC--AUGAGCUGUUA- -5'
19740 5' -51.5 NC_004687.1 + 85864 0.68 0.93707
Target:  5'- gGC-UGUGCACGCAGccUGCUCGGu--- -3'
miRNA:   3'- aUGaACGCGUGCGUC--AUGAGCUguua -5'
19740 5' -51.5 NC_004687.1 + 86024 0.66 0.980353
Target:  5'- cGCcUGCuGCGCGaCA-UGCUCGACAAg -3'
miRNA:   3'- aUGaACG-CGUGC-GUcAUGAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 86111 0.68 0.93707
Target:  5'- gUGCcgGUGCGCGCGGUcgcggcggACUCGACc-- -3'
miRNA:   3'- -AUGaaCGCGUGCGUCA--------UGAGCUGuua -5'
19740 5' -51.5 NC_004687.1 + 89404 0.68 0.946736
Target:  5'- cGCUggcUGCGCggcucgGCGCGGUGCgaccUCGACGGc -3'
miRNA:   3'- aUGA---ACGCG------UGCGUCAUG----AGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 90293 0.68 0.93707
Target:  5'- aGCUUGCGCagcaGCGCGGUggccACcCGACGc- -3'
miRNA:   3'- aUGAACGCG----UGCGUCA----UGaGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 90458 0.66 0.982518
Target:  5'- gGCUUGUccuGguCGguGUGCUCGAUg-- -3'
miRNA:   3'- aUGAACG---CguGCguCAUGAGCUGuua -5'
19740 5' -51.5 NC_004687.1 + 92121 0.66 0.984498
Target:  5'- gUGgUUGCGguCGcCGGUGCcCGACGAc -3'
miRNA:   3'- -AUgAACGCguGC-GUCAUGaGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 97618 0.66 0.977748
Target:  5'- cGCUUGUGUucACGCAgguggccGUACUUGGCGu- -3'
miRNA:   3'- aUGAACGCG--UGCGU-------CAUGAGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 102919 0.7 0.894944
Target:  5'- ----cGCGCGCGCGGguccaccgGCUCGACc-- -3'
miRNA:   3'- augaaCGCGUGCGUCa-------UGAGCUGuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.