Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19740 | 5' | -51.5 | NC_004687.1 | + | 102919 | 0.7 | 0.894944 |
Target: 5'- ----cGCGCGCGCGGguccaccgGCUCGACc-- -3' miRNA: 3'- augaaCGCGUGCGUCa-------UGAGCUGuua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 86024 | 0.66 | 0.980353 |
Target: 5'- cGCcUGCuGCGCGaCA-UGCUCGACAAg -3' miRNA: 3'- aUGaACG-CGUGC-GUcAUGAGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 66734 | 0.66 | 0.977994 |
Target: 5'- cUACaUGC-CugGCAuGUACUCGGCGc- -3' miRNA: 3'- -AUGaACGcGugCGU-CAUGAGCUGUua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 24159 | 0.67 | 0.962998 |
Target: 5'- ----cGUGCGCGCGGUGCUCucgGACc-- -3' miRNA: 3'- augaaCGCGUGCGUCAUGAG---CUGuua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 89404 | 0.68 | 0.946736 |
Target: 5'- cGCUggcUGCGCggcucgGCGCGGUGCgaccUCGACGGc -3' miRNA: 3'- aUGA---ACGCG------UGCGUCAUG----AGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 85864 | 0.68 | 0.93707 |
Target: 5'- gGC-UGUGCACGCAGccUGCUCGGu--- -3' miRNA: 3'- aUGaACGCGUGCGUC--AUGAGCUguua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 143523 | 0.68 | 0.93707 |
Target: 5'- aGCUgaugGCcuuCGCGCAGUGCUCGguGCAGa -3' miRNA: 3'- aUGAa---CGc--GUGCGUCAUGAGC--UGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 86111 | 0.68 | 0.93707 |
Target: 5'- gUGCcgGUGCGCGCGGUcgcggcggACUCGACc-- -3' miRNA: 3'- -AUGaaCGCGUGCGUCA--------UGAGCUGuua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 149603 | 0.68 | 0.936559 |
Target: 5'- gACUUGCGCacucgcgugcgACGCAuGUgcgacgaGCUCGACAu- -3' miRNA: 3'- aUGAACGCG-----------UGCGU-CA-------UGAGCUGUua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 149914 | 0.66 | 0.977994 |
Target: 5'- ---aUGCGCAgCGCGGc-CUCGGCAGc -3' miRNA: 3'- augaACGCGU-GCGUCauGAGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 9859 | 0.66 | 0.980353 |
Target: 5'- gACcUG-GCGCGCGGU-CUCGGCGu- -3' miRNA: 3'- aUGaACgCGUGCGUCAuGAGCUGUua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 80433 | 0.66 | 0.980353 |
Target: 5'- ---cUGCGCcugcugcuGCGCGGccUGCUCGGCGGUc -3' miRNA: 3'- augaACGCG--------UGCGUC--AUGAGCUGUUA- -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 29489 | 0.66 | 0.982518 |
Target: 5'- -cCUUGCGCAuCGCGaucuccauCUCGGCGAUg -3' miRNA: 3'- auGAACGCGU-GCGUcau-----GAGCUGUUA- -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 90458 | 0.66 | 0.982518 |
Target: 5'- gGCUUGUccuGguCGguGUGCUCGAUg-- -3' miRNA: 3'- aUGAACG---CguGCguCAUGAGCUGuua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 103247 | 0.66 | 0.984498 |
Target: 5'- gGCUUGCgGCccggacgauuaGgGCGGUGCUCGucGCAGUa -3' miRNA: 3'- aUGAACG-CG-----------UgCGUCAUGAGC--UGUUA- -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 148498 | 0.66 | 0.984498 |
Target: 5'- aGCUUGUcCugGCAGgcCUUGACGc- -3' miRNA: 3'- aUGAACGcGugCGUCauGAGCUGUua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 48208 | 0.66 | 0.984498 |
Target: 5'- aGCUUGCGgGCGU---ACUCGACc-- -3' miRNA: 3'- aUGAACGCgUGCGucaUGAGCUGuua -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 92121 | 0.66 | 0.984498 |
Target: 5'- gUGgUUGCGguCGcCGGUGCcCGACGAc -3' miRNA: 3'- -AUgAACGCguGC-GUCAUGaGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 48760 | 0.66 | 0.985241 |
Target: 5'- gACUUGcCGCA-GCAGcuggaccucccgggGCUCGACGAg -3' miRNA: 3'- aUGAAC-GCGUgCGUCa-------------UGAGCUGUUa -5' |
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19740 | 5' | -51.5 | NC_004687.1 | + | 147603 | 1.05 | 0.011199 |
Target: 5'- gUACUUGCGCACGCAGUACUCGACAAUg -3' miRNA: 3'- -AUGAACGCGUGCGUCAUGAGCUGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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