miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19741 5' -57.5 NC_004687.1 + 146031 1.08 0.002457
Target:  5'- uGACGGCUCCGAUGACGACAAGGGCCAg -3'
miRNA:   3'- -CUGCCGAGGCUACUGCUGUUCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 130179 0.9 0.039946
Target:  5'- uGACGGCggugCCGAgGACGGCGAGGGCCAg -3'
miRNA:   3'- -CUGCCGa---GGCUaCUGCUGUUCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 60776 0.79 0.211276
Target:  5'- aACGGCUCCGGUGugGGCAugacccgcGcGGCCAa -3'
miRNA:   3'- cUGCCGAGGCUACugCUGUu-------C-CCGGU- -5'
19741 5' -57.5 NC_004687.1 + 26864 0.78 0.232766
Target:  5'- --gGGgUCCGAUGACGACAuucccgaauGGGCCAa -3'
miRNA:   3'- cugCCgAGGCUACUGCUGUu--------CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 74756 0.73 0.444927
Target:  5'- aGCGGCucUCCGccGACGGCG-GGGCCu -3'
miRNA:   3'- cUGCCG--AGGCuaCUGCUGUuCCCGGu -5'
19741 5' -57.5 NC_004687.1 + 82122 0.73 0.444927
Target:  5'- cGGCGGCagcgCCGGUagcGCGACAGGuGGCCGu -3'
miRNA:   3'- -CUGCCGa---GGCUAc--UGCUGUUC-CCGGU- -5'
19741 5' -57.5 NC_004687.1 + 148228 0.73 0.463115
Target:  5'- uACGGCgaCGAgGACGGCcAGGGCCAu -3'
miRNA:   3'- cUGCCGagGCUaCUGCUGuUCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 4943 0.72 0.500608
Target:  5'- cGACGaCUCCGGUGGCG-CAGGGGguuCCGg -3'
miRNA:   3'- -CUGCcGAGGCUACUGCuGUUCCC---GGU- -5'
19741 5' -57.5 NC_004687.1 + 74012 0.72 0.510192
Target:  5'- -gUGGCgUCGGUGGCGGCAuGGGCUAc -3'
miRNA:   3'- cuGCCGaGGCUACUGCUGUuCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 18159 0.71 0.589164
Target:  5'- -cCGGUgCCGGUGugGGCcGGGGCUc -3'
miRNA:   3'- cuGCCGaGGCUACugCUGuUCCCGGu -5'
19741 5' -57.5 NC_004687.1 + 81973 0.71 0.589164
Target:  5'- aACGGCgCCGGUGGCGGCGguGGuGGCg- -3'
miRNA:   3'- cUGCCGaGGCUACUGCUGU--UC-CCGgu -5'
19741 5' -57.5 NC_004687.1 + 138696 0.71 0.596213
Target:  5'- cGugGGCUCCGGcggcgagcuggacaUGACGAUGucGGuGGCCu -3'
miRNA:   3'- -CugCCGAGGCU--------------ACUGCUGU--UC-CCGGu -5'
19741 5' -57.5 NC_004687.1 + 146309 0.7 0.609336
Target:  5'- aGCGG-UCCGAUcGugGGCu-GGGCCAa -3'
miRNA:   3'- cUGCCgAGGCUA-CugCUGuuCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 27157 0.7 0.639699
Target:  5'- cGACGGg-CCGGUGcGCGugGuguGGGCCGg -3'
miRNA:   3'- -CUGCCgaGGCUAC-UGCugUu--CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 20192 0.7 0.649819
Target:  5'- cACGGCUCCGggGugGGgA--GGCCAc -3'
miRNA:   3'- cUGCCGAGGCuaCugCUgUucCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 116246 0.7 0.659925
Target:  5'- -uCGGCUCgGGcacaccgGGCGGCAacucGGGGCCGg -3'
miRNA:   3'- cuGCCGAGgCUa------CUGCUGU----UCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 79206 0.69 0.684075
Target:  5'- gGACGGUUCCaGAgcaccaucuccggcuUGuACGGCAccggucAGGGCCAg -3'
miRNA:   3'- -CUGCCGAGG-CU---------------AC-UGCUGU------UCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 54002 0.69 0.690079
Target:  5'- aGugGGUgCCGAUGAcCGACGAGcucGCCGc -3'
miRNA:   3'- -CugCCGaGGCUACU-GCUGUUCc--CGGU- -5'
19741 5' -57.5 NC_004687.1 + 73740 0.69 0.690079
Target:  5'- -uCGGCgucucgCCGAUGaccgGCGGCAGcGGGCCc -3'
miRNA:   3'- cuGCCGa-----GGCUAC----UGCUGUU-CCCGGu -5'
19741 5' -57.5 NC_004687.1 + 14610 0.69 0.70996
Target:  5'- -cCGGCU-CGAcGGCGGCAagaccaugcgucAGGGCCAc -3'
miRNA:   3'- cuGCCGAgGCUaCUGCUGU------------UCCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.