miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19741 5' -57.5 NC_004687.1 + 77701 0.68 0.767765
Target:  5'- gGGCGGUgagaaGAUGGcCGACAuGGGCCu -3'
miRNA:   3'- -CUGCCGagg--CUACU-GCUGUuCCCGGu -5'
19741 5' -57.5 NC_004687.1 + 73740 0.69 0.690079
Target:  5'- -uCGGCgucucgCCGAUGaccgGCGGCAGcGGGCCc -3'
miRNA:   3'- cuGCCGa-----GGCUAC----UGCUGUU-CCCGGu -5'
19741 5' -57.5 NC_004687.1 + 154067 0.69 0.70996
Target:  5'- aGGCGGCUC--GUGugG-CAAGGGCa- -3'
miRNA:   3'- -CUGCCGAGgcUACugCuGUUCCCGgu -5'
19741 5' -57.5 NC_004687.1 + 14610 0.69 0.70996
Target:  5'- -cCGGCU-CGAcGGCGGCAagaccaugcgucAGGGCCAc -3'
miRNA:   3'- cuGCCGAgGCUaCUGCUGU------------UCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 139889 0.68 0.738309
Target:  5'- cGCGGCgacaUCgCGGUcaucacugccaccGACGACAAGGGCUc -3'
miRNA:   3'- cUGCCG----AG-GCUA-------------CUGCUGUUCCCGGu -5'
19741 5' -57.5 NC_004687.1 + 39521 0.68 0.758374
Target:  5'- gGGCGGUccUCCGGUGGCcccggcgccuGGCGucgccGGGCCGg -3'
miRNA:   3'- -CUGCCG--AGGCUACUG----------CUGUu----CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 34730 0.68 0.758374
Target:  5'- gGACGcGCccgCCGAcGACGGCAgcgcuGGuGGCCAg -3'
miRNA:   3'- -CUGC-CGa--GGCUaCUGCUGU-----UC-CCGGU- -5'
19741 5' -57.5 NC_004687.1 + 95194 0.68 0.767765
Target:  5'- aGGCaGGCgugCCGAUGuCGACcAGGGUg- -3'
miRNA:   3'- -CUG-CCGa--GGCUACuGCUGuUCCCGgu -5'
19741 5' -57.5 NC_004687.1 + 62455 0.68 0.767765
Target:  5'- aGCGGUUCCGAcgUGAC-ACGGcGGGCUu -3'
miRNA:   3'- cUGCCGAGGCU--ACUGcUGUU-CCCGGu -5'
19741 5' -57.5 NC_004687.1 + 79206 0.69 0.684075
Target:  5'- gGACGGUUCCaGAgcaccaucuccggcuUGuACGGCAccggucAGGGCCAg -3'
miRNA:   3'- -CUGCCGAGG-CU---------------AC-UGCUGU------UCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 20192 0.7 0.649819
Target:  5'- cACGGCUCCGggGugGGgA--GGCCAc -3'
miRNA:   3'- cUGCCGAGGCuaCugCUgUucCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 27157 0.7 0.639699
Target:  5'- cGACGGg-CCGGUGcGCGugGuguGGGCCGg -3'
miRNA:   3'- -CUGCCgaGGCUAC-UGCugUu--CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 26864 0.78 0.232766
Target:  5'- --gGGgUCCGAUGACGACAuucccgaauGGGCCAa -3'
miRNA:   3'- cugCCgAGGCUACUGCUGUu--------CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 74756 0.73 0.444927
Target:  5'- aGCGGCucUCCGccGACGGCG-GGGCCu -3'
miRNA:   3'- cUGCCG--AGGCuaCUGCUGUuCCCGGu -5'
19741 5' -57.5 NC_004687.1 + 82122 0.73 0.444927
Target:  5'- cGGCGGCagcgCCGGUagcGCGACAGGuGGCCGu -3'
miRNA:   3'- -CUGCCGa---GGCUAc--UGCUGUUC-CCGGU- -5'
19741 5' -57.5 NC_004687.1 + 74012 0.72 0.510192
Target:  5'- -gUGGCgUCGGUGGCGGCAuGGGCUAc -3'
miRNA:   3'- cuGCCGaGGCUACUGCUGUuCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 81973 0.71 0.589164
Target:  5'- aACGGCgCCGGUGGCGGCGguGGuGGCg- -3'
miRNA:   3'- cUGCCGaGGCUACUGCUGU--UC-CCGgu -5'
19741 5' -57.5 NC_004687.1 + 18159 0.71 0.589164
Target:  5'- -cCGGUgCCGGUGugGGCcGGGGCUc -3'
miRNA:   3'- cuGCCGaGGCUACugCUGuUCCCGGu -5'
19741 5' -57.5 NC_004687.1 + 138696 0.71 0.596213
Target:  5'- cGugGGCUCCGGcggcgagcuggacaUGACGAUGucGGuGGCCu -3'
miRNA:   3'- -CugCCGAGGCU--------------ACUGCUGU--UC-CCGGu -5'
19741 5' -57.5 NC_004687.1 + 146309 0.7 0.609336
Target:  5'- aGCGG-UCCGAUcGugGGCu-GGGCCAa -3'
miRNA:   3'- cUGCCgAGGCUA-CugCUGuuCCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.