miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19741 5' -57.5 NC_004687.1 + 2908 0.67 0.786183
Target:  5'- -uCGGCUUCGAUGuCGACGccgauguGGGCg- -3'
miRNA:   3'- cuGCCGAGGCUACuGCUGUu------CCCGgu -5'
19741 5' -57.5 NC_004687.1 + 4943 0.72 0.500608
Target:  5'- cGACGaCUCCGGUGGCG-CAGGGGguuCCGg -3'
miRNA:   3'- -CUGCcGAGGCUACUGCuGUUCCC---GGU- -5'
19741 5' -57.5 NC_004687.1 + 6073 0.68 0.756483
Target:  5'- cGACGGCgaucuggcgggcCCGAcgGGCGuACucGGGCCAg -3'
miRNA:   3'- -CUGCCGa-----------GGCUa-CUGC-UGuuCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 7658 0.66 0.853779
Target:  5'- cGACGcGCUUCG-UGcgcagcGCGGCAAguGGGCCGa -3'
miRNA:   3'- -CUGC-CGAGGCuAC------UGCUGUU--CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 10420 0.68 0.729582
Target:  5'- uGACGGCuugcUCCGGagUGAUGGCGuuGGGGaCCu -3'
miRNA:   3'- -CUGCCG----AGGCU--ACUGCUGU--UCCC-GGu -5'
19741 5' -57.5 NC_004687.1 + 12123 0.67 0.795193
Target:  5'- aGGCGGUguagaucaggCCGGUGGCGAuCGAGGacuGCCc -3'
miRNA:   3'- -CUGCCGa---------GGCUACUGCU-GUUCC---CGGu -5'
19741 5' -57.5 NC_004687.1 + 12877 0.68 0.777037
Target:  5'- --aGGCgCCGGUGcgcgGCGGCGAucgccGGGCCAa -3'
miRNA:   3'- cugCCGaGGCUAC----UGCUGUU-----CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 14299 0.66 0.861418
Target:  5'- cGACGGg-CC-AUGAUGGCAgAGGGCUg -3'
miRNA:   3'- -CUGCCgaGGcUACUGCUGU-UCCCGGu -5'
19741 5' -57.5 NC_004687.1 + 14610 0.69 0.70996
Target:  5'- -cCGGCU-CGAcGGCGGCAagaccaugcgucAGGGCCAc -3'
miRNA:   3'- cuGCCGAgGCUaCUGCUGU------------UCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 18159 0.71 0.589164
Target:  5'- -cCGGUgCCGGUGugGGCcGGGGCUc -3'
miRNA:   3'- cuGCCGaGGCUACugCUGuUCCCGGu -5'
19741 5' -57.5 NC_004687.1 + 20192 0.7 0.649819
Target:  5'- cACGGCUCCGggGugGGgA--GGCCAc -3'
miRNA:   3'- cUGCCGAGGCuaCugCUgUucCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 20195 0.68 0.777037
Target:  5'- cACGGC-CCGGcccagGACGAUAGGggauGGCCAc -3'
miRNA:   3'- cUGCCGaGGCUa----CUGCUGUUC----CCGGU- -5'
19741 5' -57.5 NC_004687.1 + 22038 0.67 0.804059
Target:  5'- uGCaGCUCUGGcgccUGAgCGACAuGGGCCGu -3'
miRNA:   3'- cUGcCGAGGCU----ACU-GCUGUuCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 26702 0.67 0.821325
Target:  5'- cGGCGGCUaCGAcGcCGACAA-GGCCGa -3'
miRNA:   3'- -CUGCCGAgGCUaCuGCUGUUcCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 26864 0.78 0.232766
Target:  5'- --gGGgUCCGAUGACGACAuucccgaauGGGCCAa -3'
miRNA:   3'- cugCCgAGGCUACUGCUGUu--------CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 27157 0.7 0.639699
Target:  5'- cGACGGg-CCGGUGcGCGugGuguGGGCCGg -3'
miRNA:   3'- -CUGCCgaGGCUAC-UGCugUu--CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 28630 0.68 0.777037
Target:  5'- uGACGGCUCCGccGAaucgGugGAGcGCCGc -3'
miRNA:   3'- -CUGCCGAGGCuaCUg---CugUUCcCGGU- -5'
19741 5' -57.5 NC_004687.1 + 33767 0.67 0.804059
Target:  5'- -cCGGCUCgGAUaagcccGGCGGCAAGgaGGCCc -3'
miRNA:   3'- cuGCCGAGgCUA------CUGCUGUUC--CCGGu -5'
19741 5' -57.5 NC_004687.1 + 34730 0.68 0.758374
Target:  5'- gGACGcGCccgCCGAcGACGGCAgcgcuGGuGGCCAg -3'
miRNA:   3'- -CUGC-CGa--GGCUaCUGCUGU-----UC-CCGGU- -5'
19741 5' -57.5 NC_004687.1 + 36052 0.66 0.853779
Target:  5'- gGGCGGCgagCUGGuucuUGACGAUcuGGGCg- -3'
miRNA:   3'- -CUGCCGa--GGCU----ACUGCUGuuCCCGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.