miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19743 5' -62.3 NC_004687.1 + 144348 1.09 0.000726
Target:  5'- gACCCACAGUGCCGCCGUGGCACCCACg -3'
miRNA:   3'- -UGGGUGUCACGGCGGCACCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 74128 0.78 0.118988
Target:  5'- ---gGCGGUGCCGCCGUcGGCACCC-Ca -3'
miRNA:   3'- ugggUGUCACGGCGGCA-CCGUGGGuG- -5'
19743 5' -62.3 NC_004687.1 + 44493 0.77 0.1349
Target:  5'- gACCCcCGGUGCCGC--UGGCACCCGg -3'
miRNA:   3'- -UGGGuGUCACGGCGgcACCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 101672 0.77 0.138309
Target:  5'- uGCCCGcCAGUGCgguggagGCCGUGGUGCCCAg -3'
miRNA:   3'- -UGGGU-GUCACGg------CGGCACCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 110681 0.76 0.152749
Target:  5'- uGCCCgACGGcGCCGCC-UGGCGCCgACg -3'
miRNA:   3'- -UGGG-UGUCaCGGCGGcACCGUGGgUG- -5'
19743 5' -62.3 NC_004687.1 + 25656 0.74 0.225498
Target:  5'- uCCCGagcguugguguaguaGGUGCCGCCGUcGGUGCCCAg -3'
miRNA:   3'- uGGGUg--------------UCACGGCGGCA-CCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 37747 0.74 0.230329
Target:  5'- cACCUgGCGGUGCuCGCCGgugaagucgaaGGCGCCCACc -3'
miRNA:   3'- -UGGG-UGUCACG-GCGGCa----------CCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 45330 0.73 0.252868
Target:  5'- aACCCgGCAGcGCCGaCCGggGGCACCC-Cg -3'
miRNA:   3'- -UGGG-UGUCaCGGC-GGCa-CCGUGGGuG- -5'
19743 5' -62.3 NC_004687.1 + 9801 0.73 0.258779
Target:  5'- gACCCAUGGgaaauggcGCCGCCG-GGUAgCCCACc -3'
miRNA:   3'- -UGGGUGUCa-------CGGCGGCaCCGU-GGGUG- -5'
19743 5' -62.3 NC_004687.1 + 94338 0.72 0.282913
Target:  5'- uGCCCgagACGGUGCCGgugaaCGUcggguuguugaucGGCGCCCGCa -3'
miRNA:   3'- -UGGG---UGUCACGGCg----GCA-------------CCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 111022 0.72 0.296631
Target:  5'- cACUCAgGGUGUCGCCGgacuggaucUGGUACUCGCc -3'
miRNA:   3'- -UGGGUgUCACGGCGGC---------ACCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 82143 0.72 0.296631
Target:  5'- aGCCUGcCGGUGCCGCCGUcGaGUAgCCGCc -3'
miRNA:   3'- -UGGGU-GUCACGGCGGCA-C-CGUgGGUG- -5'
19743 5' -62.3 NC_004687.1 + 101795 0.71 0.317114
Target:  5'- uGCCCAC---GUCGCCGgGGCGCUCGCu -3'
miRNA:   3'- -UGGGUGucaCGGCGGCaCCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 2899 0.71 0.317114
Target:  5'- uGCCCACcGUcGCCGCgacUGGCGCCCGu -3'
miRNA:   3'- -UGGGUGuCA-CGGCGgc-ACCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 117167 0.71 0.331352
Target:  5'- gGCgCCAcCGGUGCCGCCGgagaucaGCGCCuCACc -3'
miRNA:   3'- -UG-GGU-GUCACGGCGGCac-----CGUGG-GUG- -5'
19743 5' -62.3 NC_004687.1 + 48165 0.71 0.331352
Target:  5'- cACCCGCAG-GCUGUCGgcgucggGGCGCuCCAg -3'
miRNA:   3'- -UGGGUGUCaCGGCGGCa------CCGUG-GGUg -5'
19743 5' -62.3 NC_004687.1 + 72794 0.71 0.338645
Target:  5'- uCCgGCGGgacGuuGCCgGUGGUGCCCACg -3'
miRNA:   3'- uGGgUGUCa--CggCGG-CACCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 13118 0.71 0.338645
Target:  5'- uGCCCAU-GUGCCGCagcggguUGGCAgCCGCa -3'
miRNA:   3'- -UGGGUGuCACGGCGgc-----ACCGUgGGUG- -5'
19743 5' -62.3 NC_004687.1 + 37680 0.71 0.338645
Target:  5'- gGCgCCGCcGUGCCGCCGaGGCcaaCCGCc -3'
miRNA:   3'- -UG-GGUGuCACGGCGGCaCCGug-GGUG- -5'
19743 5' -62.3 NC_004687.1 + 36727 0.71 0.338645
Target:  5'- gGCCCGCAG-GCC-CCG-GGCAagaCCGCc -3'
miRNA:   3'- -UGGGUGUCaCGGcGGCaCCGUg--GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.