miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19743 5' -62.3 NC_004687.1 + 2567 0.67 0.526194
Target:  5'- gGCCCAgGcUGCCGUCGgucuUGGCGaCCGCa -3'
miRNA:   3'- -UGGGUgUcACGGCGGC----ACCGUgGGUG- -5'
19743 5' -62.3 NC_004687.1 + 2899 0.71 0.317114
Target:  5'- uGCCCACcGUcGCCGCgacUGGCGCCCGu -3'
miRNA:   3'- -UGGGUGuCA-CGGCGgc-ACCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 6989 0.66 0.633582
Target:  5'- cGCCCGC-GUGuCCGgcCCGgcGGCGCCC-Cg -3'
miRNA:   3'- -UGGGUGuCAC-GGC--GGCa-CCGUGGGuG- -5'
19743 5' -62.3 NC_004687.1 + 8180 0.69 0.45251
Target:  5'- uGCCCGCGcgcggccuGUGCgGCCaugGGCAUCCAg -3'
miRNA:   3'- -UGGGUGU--------CACGgCGGca-CCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 8382 0.67 0.53574
Target:  5'- gGCCCGC--UGCUGCaccugcugaacaCGUGGCGCgCGCg -3'
miRNA:   3'- -UGGGUGucACGGCG------------GCACCGUGgGUG- -5'
19743 5' -62.3 NC_004687.1 + 9801 0.73 0.258779
Target:  5'- gACCCAUGGgaaauggcGCCGCCG-GGUAgCCCACc -3'
miRNA:   3'- -UGGGUGUCa-------CGGCGGCaCCGU-GGGUG- -5'
19743 5' -62.3 NC_004687.1 + 10702 0.67 0.574471
Target:  5'- uGCCCA-GGUGUCGuuGgggucGGCGCCCu- -3'
miRNA:   3'- -UGGGUgUCACGGCggCa----CCGUGGGug -5'
19743 5' -62.3 NC_004687.1 + 11423 0.68 0.516713
Target:  5'- cGCCC-CAGaucucgccgaaGUCGCCGUGGC-CCCGg -3'
miRNA:   3'- -UGGGuGUCa----------CGGCGGCACCGuGGGUg -5'
19743 5' -62.3 NC_004687.1 + 13118 0.71 0.338645
Target:  5'- uGCCCAU-GUGCCGCagcggguUGGCAgCCGCa -3'
miRNA:   3'- -UGGGUGuCACGGCGgc-----ACCGUgGGUG- -5'
19743 5' -62.3 NC_004687.1 + 13446 0.66 0.627648
Target:  5'- gGCCCGCAGcgcGuCCugagcagcgacguagGCCGgggugaccagggUGGCGCCCACc -3'
miRNA:   3'- -UGGGUGUCa--C-GG---------------CGGC------------ACCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 13742 0.66 0.61381
Target:  5'- gGCCCGguGcGCaCGCUcaGGCuGCCCACg -3'
miRNA:   3'- -UGGGUguCaCG-GCGGcaCCG-UGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 14759 0.71 0.341595
Target:  5'- gGCCCAUGGcauccagcggggcgaUGCCGuuG-GGCAcCCCACg -3'
miRNA:   3'- -UGGGUGUC---------------ACGGCggCaCCGU-GGGUG- -5'
19743 5' -62.3 NC_004687.1 + 17472 0.69 0.45251
Target:  5'- -aUCGgGGUGUCGgCGUcacgGGCGCCCACg -3'
miRNA:   3'- ugGGUgUCACGGCgGCA----CCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 22567 0.67 0.526194
Target:  5'- cCCUugGGuUGUCGauGUcGGCACCCACu -3'
miRNA:   3'- uGGGugUC-ACGGCggCA-CCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 22940 0.66 0.61381
Target:  5'- cCCCGCAGacucuaGCCGCUucGGCACCgaGCa -3'
miRNA:   3'- uGGGUGUCa-----CGGCGGcaCCGUGGg-UG- -5'
19743 5' -62.3 NC_004687.1 + 23336 0.67 0.545346
Target:  5'- gGCCCuGCGG-GCCaaGCUG-GGCACCgACa -3'
miRNA:   3'- -UGGG-UGUCaCGG--CGGCaCCGUGGgUG- -5'
19743 5' -62.3 NC_004687.1 + 23433 0.66 0.584264
Target:  5'- cUCCGCcuGcGCCGUCcaGGCGCCCGCu -3'
miRNA:   3'- uGGGUGu-CaCGGCGGcaCCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 24486 0.66 0.594089
Target:  5'- cGCCCGCAG-GuuGUCGUccagacGGCGCCgAg -3'
miRNA:   3'- -UGGGUGUCaCggCGGCA------CCGUGGgUg -5'
19743 5' -62.3 NC_004687.1 + 25656 0.74 0.225498
Target:  5'- uCCCGagcguugguguaguaGGUGCCGCCGUcGGUGCCCAg -3'
miRNA:   3'- uGGGUg--------------UCACGGCGGCA-CCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 31103 0.66 0.623693
Target:  5'- cGCCCACcugauGaUGCCGaCCGaccUGGUGCaCCACu -3'
miRNA:   3'- -UGGGUGu----C-ACGGC-GGC---ACCGUG-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.