miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19743 5' -62.3 NC_004687.1 + 23336 0.67 0.545346
Target:  5'- gGCCCuGCGG-GCCaaGCUG-GGCACCgACa -3'
miRNA:   3'- -UGGG-UGUCaCGG--CGGCaCCGUGGgUG- -5'
19743 5' -62.3 NC_004687.1 + 141221 0.68 0.488702
Target:  5'- cACCCAgCGGUGgaCGCgCGgacccugGGCGCCCAa -3'
miRNA:   3'- -UGGGU-GUCACg-GCG-GCa------CCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 128013 0.68 0.497033
Target:  5'- gACCUGCcucaacgagauggAGU-CCGCCgGUGGCACgCCGCg -3'
miRNA:   3'- -UGGGUG-------------UCAcGGCGG-CACCGUG-GGUG- -5'
19743 5' -62.3 NC_004687.1 + 49397 0.68 0.497963
Target:  5'- cGCCCGaggAGU-CCGUgGUGGCuCCCACc -3'
miRNA:   3'- -UGGGUg--UCAcGGCGgCACCGuGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 22567 0.67 0.526194
Target:  5'- cCCUugGGuUGUCGauGUcGGCACCCACu -3'
miRNA:   3'- uGGGugUC-ACGGCggCA-CCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 8382 0.67 0.53574
Target:  5'- gGCCCGC--UGCUGCaccugcugaacaCGUGGCGCgCGCg -3'
miRNA:   3'- -UGGGUGucACGGCG------------GCACCGUGgGUG- -5'
19743 5' -62.3 NC_004687.1 + 70511 0.67 0.53574
Target:  5'- cACgC-CGGUGCCGUCGgc-CACCCGCa -3'
miRNA:   3'- -UGgGuGUCACGGCGGCaccGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 149855 0.67 0.53574
Target:  5'- gGCCCGcCAGaucGCCGUCGccGaCGCCCACa -3'
miRNA:   3'- -UGGGU-GUCa--CGGCGGCacC-GUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 34834 0.67 0.545346
Target:  5'- gUCCACAgagcGUGCCGCCGgaGGuCAUCgACg -3'
miRNA:   3'- uGGGUGU----CACGGCGGCa-CC-GUGGgUG- -5'
19743 5' -62.3 NC_004687.1 + 145195 0.68 0.470429
Target:  5'- cAUCgCGCGGgugGCCGCUGgccagGGCGCCgACc -3'
miRNA:   3'- -UGG-GUGUCa--CGGCGGCa----CCGUGGgUG- -5'
19743 5' -62.3 NC_004687.1 + 8180 0.69 0.45251
Target:  5'- uGCCCGCGcgcggccuGUGCgGCCaugGGCAUCCAg -3'
miRNA:   3'- -UGGGUGU--------CACGgCGGca-CCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 39682 0.69 0.443692
Target:  5'- cGCCCGguGUGCCcgaGCCGacUGaGguCCCGCg -3'
miRNA:   3'- -UGGGUguCACGG---CGGC--AC-CguGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 45330 0.73 0.252868
Target:  5'- aACCCgGCAGcGCCGaCCGggGGCACCC-Cg -3'
miRNA:   3'- -UGGG-UGUCaCGGC-GGCa-CCGUGGGuG- -5'
19743 5' -62.3 NC_004687.1 + 2899 0.71 0.317114
Target:  5'- uGCCCACcGUcGCCGCgacUGGCGCCCGu -3'
miRNA:   3'- -UGGGUGuCA-CGGCGgc-ACCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 36727 0.71 0.338645
Target:  5'- gGCCCGCAG-GCC-CCG-GGCAagaCCGCc -3'
miRNA:   3'- -UGGGUGUCaCGGcGGCaCCGUg--GGUG- -5'
19743 5' -62.3 NC_004687.1 + 37680 0.71 0.338645
Target:  5'- gGCgCCGCcGUGCCGCCGaGGCcaaCCGCc -3'
miRNA:   3'- -UG-GGUGuCACGGCGGCaCCGug-GGUG- -5'
19743 5' -62.3 NC_004687.1 + 31250 0.7 0.376839
Target:  5'- cACCCACGgcGUGCUGaCCGagGGCAaccaCCGCg -3'
miRNA:   3'- -UGGGUGU--CACGGC-GGCa-CCGUg---GGUG- -5'
19743 5' -62.3 NC_004687.1 + 114951 0.7 0.384818
Target:  5'- gGCCCGCAaccUGCuCGCCGUG-C-CCCGCg -3'
miRNA:   3'- -UGGGUGUc--ACG-GCGGCACcGuGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 149100 0.7 0.384818
Target:  5'- cGCCUuCGGUGCUGCCGUGaucgucaucGUGCuCCACg -3'
miRNA:   3'- -UGGGuGUCACGGCGGCAC---------CGUG-GGUG- -5'
19743 5' -62.3 NC_004687.1 + 32146 0.7 0.392908
Target:  5'- -gCCGguG-GUCGCCGUcGGCACCCGa -3'
miRNA:   3'- ugGGUguCaCGGCGGCA-CCGUGGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.