miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19744 5' -54.9 NC_004687.1 + 144900 0.66 0.951995
Target:  5'- uCCGCAGCCcuggcgcCGAuGGGAuugacgaGGCCGu -3'
miRNA:   3'- -GGCGUCGGaa-----GCUcCCCUuua----UCGGC- -5'
19744 5' -54.9 NC_004687.1 + 24125 0.66 0.947824
Target:  5'- aCCGgAGCCUcCGA-GGGAGGU-GCUa -3'
miRNA:   3'- -GGCgUCGGAaGCUcCCCUUUAuCGGc -5'
19744 5' -54.9 NC_004687.1 + 27075 0.66 0.947824
Target:  5'- cCCGCAGgCgagCGAucGGGGuGcgGGCCu -3'
miRNA:   3'- -GGCGUCgGaa-GCU--CCCCuUuaUCGGc -5'
19744 5' -54.9 NC_004687.1 + 67680 0.66 0.947824
Target:  5'- -gGCAGCac-CGAGGaGGGAcUGGUCGa -3'
miRNA:   3'- ggCGUCGgaaGCUCC-CCUUuAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 13254 0.66 0.947824
Target:  5'- gCUGCGGCCauccgCGAGGcccagcauGAcGUGGCCGa -3'
miRNA:   3'- -GGCGUCGGaa---GCUCCc-------CUuUAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 43163 0.66 0.947824
Target:  5'- gCCGguGCUgccggagCGGGuGGGGcgggGGCCGg -3'
miRNA:   3'- -GGCguCGGaa-----GCUC-CCCUuua-UCGGC- -5'
19744 5' -54.9 NC_004687.1 + 150767 0.66 0.947824
Target:  5'- aCCGUGGCaggagUGAGGGucuGAUGGCUGa -3'
miRNA:   3'- -GGCGUCGgaa--GCUCCCcu-UUAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 78799 0.66 0.946962
Target:  5'- cUCGCGGCCUaccgaucgaucggcaUCGAGaucGGGcggaccacuacgacgAAGUGGCCa -3'
miRNA:   3'- -GGCGUCGGA---------------AGCUC---CCC---------------UUUAUCGGc -5'
19744 5' -54.9 NC_004687.1 + 77273 0.66 0.943421
Target:  5'- uCCgGCAGCCgcugcCGAGGGacugccguugguGGucggGAUGGCCGg -3'
miRNA:   3'- -GG-CGUCGGaa---GCUCCC------------CU----UUAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 63953 0.66 0.938782
Target:  5'- gCGgGGCC--CGAGGGGGccccGCCGg -3'
miRNA:   3'- gGCgUCGGaaGCUCCCCUuuauCGGC- -5'
19744 5' -54.9 NC_004687.1 + 41565 0.66 0.938305
Target:  5'- aCCGCAGUUaugUCGAaaacGGGcGAGucgccccGUAGCCGc -3'
miRNA:   3'- -GGCGUCGGa--AGCU----CCC-CUU-------UAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 66604 0.67 0.928792
Target:  5'- gCGCGGUgcUgGAGGaGGAGA-AGCCGg -3'
miRNA:   3'- gGCGUCGgaAgCUCC-CCUUUaUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 7107 0.67 0.923438
Target:  5'- gCGCGGCCUg-GucGGcGAAGUAGCgCGa -3'
miRNA:   3'- gGCGUCGGAagCucCC-CUUUAUCG-GC- -5'
19744 5' -54.9 NC_004687.1 + 147659 0.67 0.92123
Target:  5'- gCGCAGCCaugucacguccucUCGGGcGGcuGGUAGCCGg -3'
miRNA:   3'- gGCGUCGGa------------AGCUC-CCcuUUAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 149243 0.67 0.917846
Target:  5'- cCUGCAGCCcg-GAGGGuGAGcAGCCa -3'
miRNA:   3'- -GGCGUCGGaagCUCCCcUUUaUCGGc -5'
19744 5' -54.9 NC_004687.1 + 101560 0.67 0.899646
Target:  5'- gCGCGGCCUggGAcucccGGGcGGucUGGCCGg -3'
miRNA:   3'- gGCGUCGGAagCU-----CCC-CUuuAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 93241 0.67 0.899646
Target:  5'- aCGCAGCCgaCGAgcuguuccccauGGGGAAGgcgagagcGCCGc -3'
miRNA:   3'- gGCGUCGGaaGCU------------CCCCUUUau------CGGC- -5'
19744 5' -54.9 NC_004687.1 + 131013 0.67 0.899646
Target:  5'- uUCGCAGCCUcgCGGGcGGcGAUGGuuGc -3'
miRNA:   3'- -GGCGUCGGAa-GCUCcCCuUUAUCggC- -5'
19744 5' -54.9 NC_004687.1 + 115382 0.68 0.88635
Target:  5'- cUCGacgGGCgaUCGAGGcccgaGGAGAUGGCCGc -3'
miRNA:   3'- -GGCg--UCGgaAGCUCC-----CCUUUAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 7509 0.68 0.872155
Target:  5'- uUCGCGacacGCCga-GAGGGGAAcaAGCCc -3'
miRNA:   3'- -GGCGU----CGGaagCUCCCCUUuaUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.