miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19745 5' -56.8 NC_004687.1 + 140759 1.06 0.003514
Target:  5'- aUUGAAGCCCUCGUCGAGGACCUCGACc -3'
miRNA:   3'- -AACUUCGGGAGCAGCUCCUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 5582 0.79 0.225336
Target:  5'- cUGgcGCCCUCGUCGGcGACCgUCGACc -3'
miRNA:   3'- aACuuCGGGAGCAGCUcCUGG-AGCUG- -5'
19745 5' -56.8 NC_004687.1 + 15149 0.75 0.367415
Target:  5'- -cGAGGUCgUCGaggUCGAGGuCCUCGACg -3'
miRNA:   3'- aaCUUCGGgAGC---AGCUCCuGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 138956 0.75 0.375535
Target:  5'- -gGAGGgCCgCGUCGAGGACCUgGAg -3'
miRNA:   3'- aaCUUCgGGaGCAGCUCCUGGAgCUg -5'
19745 5' -56.8 NC_004687.1 + 10101 0.75 0.391292
Target:  5'- -cGucuGGCCCUggcagagUGUCGAGGAgCUCGACg -3'
miRNA:   3'- aaCu--UCGGGA-------GCAGCUCCUgGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 89664 0.75 0.40061
Target:  5'- -cGAGGCCugCUCGaCGAGGACCUUGGu -3'
miRNA:   3'- aaCUUCGG--GAGCaGCUCCUGGAGCUg -5'
19745 5' -56.8 NC_004687.1 + 41528 0.75 0.40061
Target:  5'- ---uGGCCCUUccaGUCGGGGuCCUCGGCg -3'
miRNA:   3'- aacuUCGGGAG---CAGCUCCuGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 11392 0.74 0.426727
Target:  5'- -aGAAGCCCgucgUCGUCGAggcguugcaguGGACCggCGACa -3'
miRNA:   3'- aaCUUCGGG----AGCAGCU-----------CCUGGa-GCUG- -5'
19745 5' -56.8 NC_004687.1 + 22669 0.74 0.444689
Target:  5'- -aGgcGUUCUCGguccgCGAGGACCUCGAa -3'
miRNA:   3'- aaCuuCGGGAGCa----GCUCCUGGAGCUg -5'
19745 5' -56.8 NC_004687.1 + 74548 0.73 0.463068
Target:  5'- aUGucGCCCUCGUCGAaGGCCcaCGACc -3'
miRNA:   3'- aACuuCGGGAGCAGCUcCUGGa-GCUG- -5'
19745 5' -56.8 NC_004687.1 + 121256 0.73 0.463068
Target:  5'- -gGAAGUCCUCGccauccucuUCGGGGGCCUCa-- -3'
miRNA:   3'- aaCUUCGGGAGC---------AGCUCCUGGAGcug -5'
19745 5' -56.8 NC_004687.1 + 29320 0.73 0.472405
Target:  5'- cUGgcGCCCUCGggcAGGAUCUCGAUg -3'
miRNA:   3'- aACuuCGGGAGCagcUCCUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 3872 0.73 0.481836
Target:  5'- gUGGcugGGCCCUUGgCGAGcACCUCGGCa -3'
miRNA:   3'- aACU---UCGGGAGCaGCUCcUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 134829 0.73 0.491358
Target:  5'- -cGcAGGCCCagGUUGAGGugUUCGGCg -3'
miRNA:   3'- aaC-UUCGGGagCAGCUCCugGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 74204 0.72 0.52435
Target:  5'- gUGguGCCCUUggucaggguccagcgGUCGcccAGGGCCUCGACa -3'
miRNA:   3'- aACuuCGGGAG---------------CAGC---UCCUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 40918 0.72 0.530262
Target:  5'- -aGAGaUUgUCGUCGAGGugCUCGACa -3'
miRNA:   3'- aaCUUcGGgAGCAGCUCCugGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 66261 0.72 0.570234
Target:  5'- --aAGGUCCUCGUCGAGcaGGCCUCGu- -3'
miRNA:   3'- aacUUCGGGAGCAGCUC--CUGGAGCug -5'
19745 5' -56.8 NC_004687.1 + 33792 0.71 0.580352
Target:  5'- -gGAGGCCCggcgccgcaaggUCGcUGAGGACCgCGACg -3'
miRNA:   3'- aaCUUCGGG------------AGCaGCUCCUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 39638 0.71 0.580352
Target:  5'- cUUGAAGCCCUCcUCGAucgcgcgccGGAaggccgcagcguCCUCGGCg -3'
miRNA:   3'- -AACUUCGGGAGcAGCU---------CCU------------GGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 110479 0.71 0.610899
Target:  5'- -aGAAGUCUUCGagggCGAGGACUUcCGGCc -3'
miRNA:   3'- aaCUUCGGGAGCa---GCUCCUGGA-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.