miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19745 5' -56.8 NC_004687.1 + 114385 0.67 0.841234
Target:  5'- ---cAGCCUgcaCGcCGAGGACCcCGACu -3'
miRNA:   3'- aacuUCGGGa--GCaGCUCCUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 20880 0.69 0.712539
Target:  5'- ---uGGCCCgCGUCGAGGACgCcgUUGACg -3'
miRNA:   3'- aacuUCGGGaGCAGCUCCUG-G--AGCUG- -5'
19745 5' -56.8 NC_004687.1 + 6314 0.69 0.732329
Target:  5'- -cGggGCCggaUCGUCGAGG-CCgacgucCGGCg -3'
miRNA:   3'- aaCuuCGGg--AGCAGCUCCuGGa-----GCUG- -5'
19745 5' -56.8 NC_004687.1 + 53638 0.69 0.742099
Target:  5'- gUGu-GCuCCUCGgaguUCGAGGACC-CGACc -3'
miRNA:   3'- aACuuCG-GGAGC----AGCUCCUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 34660 0.68 0.770793
Target:  5'- aUGAGGCCCcCGaagaggauggCGAGGACUUCccGGCa -3'
miRNA:   3'- aACUUCGGGaGCa---------GCUCCUGGAG--CUG- -5'
19745 5' -56.8 NC_004687.1 + 14237 0.68 0.78932
Target:  5'- -gGAAGCCaUgGcCGAGGACCUgGAa -3'
miRNA:   3'- aaCUUCGGgAgCaGCUCCUGGAgCUg -5'
19745 5' -56.8 NC_004687.1 + 44285 0.67 0.798376
Target:  5'- -aGGAGCg--CGUCGAGGACauccgCGACg -3'
miRNA:   3'- aaCUUCGggaGCAGCUCCUGga---GCUG- -5'
19745 5' -56.8 NC_004687.1 + 109142 0.67 0.816028
Target:  5'- cUGGAcuuGCCC--GUCGAGGGCCUCa-- -3'
miRNA:   3'- aACUU---CGGGagCAGCUCCUGGAGcug -5'
19745 5' -56.8 NC_004687.1 + 67231 0.67 0.841234
Target:  5'- ----cGCCCgaccggCGUCGAGGGCaucuaugucUUCGACg -3'
miRNA:   3'- aacuuCGGGa-----GCAGCUCCUG---------GAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 102567 0.69 0.692475
Target:  5'- -cGAucAGaCCCUCGUCGAgcagcgcgcGGGCCcCGGCg -3'
miRNA:   3'- aaCU--UC-GGGAGCAGCU---------CCUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 120531 0.69 0.692475
Target:  5'- ---uGGCCCUgGUCGAGG-CCUUccgGACg -3'
miRNA:   3'- aacuUCGGGAgCAGCUCCuGGAG---CUG- -5'
19745 5' -56.8 NC_004687.1 + 110479 0.71 0.610899
Target:  5'- -aGAAGUCUUCGagggCGAGGACUUcCGGCc -3'
miRNA:   3'- aaCUUCGGGAGCa---GCUCCUGGA-GCUG- -5'
19745 5' -56.8 NC_004687.1 + 15149 0.75 0.367415
Target:  5'- -cGAGGUCgUCGaggUCGAGGuCCUCGACg -3'
miRNA:   3'- aaCUUCGGgAGC---AGCUCCuGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 138956 0.75 0.375535
Target:  5'- -gGAGGgCCgCGUCGAGGACCUgGAg -3'
miRNA:   3'- aaCUUCgGGaGCAGCUCCUGGAgCUg -5'
19745 5' -56.8 NC_004687.1 + 10101 0.75 0.391292
Target:  5'- -cGucuGGCCCUggcagagUGUCGAGGAgCUCGACg -3'
miRNA:   3'- aaCu--UCGGGA-------GCAGCUCCUgGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 11392 0.74 0.426727
Target:  5'- -aGAAGCCCgucgUCGUCGAggcguugcaguGGACCggCGACa -3'
miRNA:   3'- aaCUUCGGG----AGCAGCU-----------CCUGGa-GCUG- -5'
19745 5' -56.8 NC_004687.1 + 22669 0.74 0.444689
Target:  5'- -aGgcGUUCUCGguccgCGAGGACCUCGAa -3'
miRNA:   3'- aaCuuCGGGAGCa----GCUCCUGGAGCUg -5'
19745 5' -56.8 NC_004687.1 + 40918 0.72 0.530262
Target:  5'- -aGAGaUUgUCGUCGAGGugCUCGACa -3'
miRNA:   3'- aaCUUcGGgAGCAGCUCCugGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 66261 0.72 0.570234
Target:  5'- --aAGGUCCUCGUCGAGcaGGCCUCGu- -3'
miRNA:   3'- aacUUCGGGAGCAGCUC--CUGGAGCug -5'
19745 5' -56.8 NC_004687.1 + 33792 0.71 0.580352
Target:  5'- -gGAGGCCCggcgccgcaaggUCGcUGAGGACCgCGACg -3'
miRNA:   3'- aaCUUCGGG------------AGCaGCUCCUGGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.