miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19745 5' -56.8 NC_004687.1 + 2221 0.66 0.879363
Target:  5'- aUGGAuGCCCgCG-CGAuGGuCCUCGGCc -3'
miRNA:   3'- aACUU-CGGGaGCaGCU-CCuGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 3091 0.67 0.798376
Target:  5'- -cGAAGCCUUCGagGuacauGGCCUCGAUc -3'
miRNA:   3'- aaCUUCGGGAGCagCuc---CUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 3872 0.73 0.481836
Target:  5'- gUGGcugGGCCCUUGgCGAGcACCUCGGCa -3'
miRNA:   3'- aACU---UCGGGAGCaGCUCcUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 5242 0.66 0.848472
Target:  5'- gUGAcccAGCCCUugggcacgaaccaCGUCucAGGAuCCUCGACg -3'
miRNA:   3'- aACU---UCGGGA-------------GCAGc-UCCU-GGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 5582 0.79 0.225336
Target:  5'- cUGgcGCCCUCGUCGGcGACCgUCGACc -3'
miRNA:   3'- aACuuCGGGAGCAGCUcCUGG-AGCUG- -5'
19745 5' -56.8 NC_004687.1 + 6314 0.69 0.732329
Target:  5'- -cGggGCCggaUCGUCGAGG-CCgacgucCGGCg -3'
miRNA:   3'- aaCuuCGGg--AGCAGCUCCuGGa-----GCUG- -5'
19745 5' -56.8 NC_004687.1 + 10101 0.75 0.391292
Target:  5'- -cGucuGGCCCUggcagagUGUCGAGGAgCUCGACg -3'
miRNA:   3'- aaCu--UCGGGA-------GCAGCUCCUgGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 11392 0.74 0.426727
Target:  5'- -aGAAGCCCgucgUCGUCGAggcguugcaguGGACCggCGACa -3'
miRNA:   3'- aaCUUCGGG----AGCAGCU-----------CCUGGa-GCUG- -5'
19745 5' -56.8 NC_004687.1 + 13813 0.66 0.88497
Target:  5'- -cGAAGCCCgagacugaGAGGACCgCGAUc -3'
miRNA:   3'- aaCUUCGGGagcag---CUCCUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 14237 0.68 0.78932
Target:  5'- -gGAAGCCaUgGcCGAGGACCUgGAa -3'
miRNA:   3'- aaCUUCGGgAgCaGCUCCUGGAgCUg -5'
19745 5' -56.8 NC_004687.1 + 15149 0.75 0.367415
Target:  5'- -cGAGGUCgUCGaggUCGAGGuCCUCGACg -3'
miRNA:   3'- aaCUUCGGgAGC---AGCUCCuGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 16013 0.66 0.872886
Target:  5'- -aGGAGCCCUUGUCGucgguggcagugauGACCgCGAUg -3'
miRNA:   3'- aaCUUCGGGAGCAGCuc------------CUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 17242 0.67 0.833012
Target:  5'- -cGGAGCCCaCGUUGAGGACggUGcCg -3'
miRNA:   3'- aaCUUCGGGaGCAGCUCCUGgaGCuG- -5'
19745 5' -56.8 NC_004687.1 + 20880 0.69 0.712539
Target:  5'- ---uGGCCCgCGUCGAGGACgCcgUUGACg -3'
miRNA:   3'- aacuUCGGGaGCAGCUCCUG-G--AGCUG- -5'
19745 5' -56.8 NC_004687.1 + 22669 0.74 0.444689
Target:  5'- -aGgcGUUCUCGguccgCGAGGACCUCGAa -3'
miRNA:   3'- aaCuuCGGGAGCa----GCUCCUGGAGCUg -5'
19745 5' -56.8 NC_004687.1 + 26377 0.66 0.849267
Target:  5'- aUUGggGUCCUCG-CGcaggcgauccAGGACCUCc-- -3'
miRNA:   3'- -AACuuCGGGAGCaGC----------UCCUGGAGcug -5'
19745 5' -56.8 NC_004687.1 + 29320 0.73 0.472405
Target:  5'- cUGgcGCCCUCGggcAGGAUCUCGAUg -3'
miRNA:   3'- aACuuCGGGAGCagcUCCUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 30325 0.69 0.732329
Target:  5'- cUGgcGCCCUCGgCcAGGGCCUC-ACg -3'
miRNA:   3'- aACuuCGGGAGCaGcUCCUGGAGcUG- -5'
19745 5' -56.8 NC_004687.1 + 33792 0.71 0.580352
Target:  5'- -gGAGGCCCggcgccgcaaggUCGcUGAGGACCgCGACg -3'
miRNA:   3'- aaCUUCGGG------------AGCaGCUCCUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 34660 0.68 0.770793
Target:  5'- aUGAGGCCCcCGaagaggauggCGAGGACUUCccGGCa -3'
miRNA:   3'- aACUUCGGGaGCa---------GCUCCUGGAG--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.