miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 5' -57.5 NC_004687.1 + 86657 0.7 0.675233
Target:  5'- cGUGUcGCggugUCGAagaggaccuaCACCGCCGACCuGGCAa -3'
miRNA:   3'- cCACA-CG----AGCU----------GUGGCGGCUGG-CUGU- -5'
19746 5' -57.5 NC_004687.1 + 95613 0.7 0.694013
Target:  5'- --cGUGUUCGAaucacgcCACCGCCacgacgccaaGGCCGACGa -3'
miRNA:   3'- ccaCACGAGCU-------GUGGCGG----------CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 131086 0.7 0.694997
Target:  5'- cGGUGauguccUGCacggCGGCggugACCGCCuGGCCGACAc -3'
miRNA:   3'- -CCAC------ACGa---GCUG----UGGCGG-CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 113123 0.69 0.704809
Target:  5'- ----cGCg-GACAUUGCCGACCGGCGa -3'
miRNA:   3'- ccacaCGagCUGUGGCGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 132045 0.69 0.704809
Target:  5'- cGGUGUGCUCGGgaACC-UgGACCGAg- -3'
miRNA:   3'- -CCACACGAGCUg-UGGcGgCUGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 5760 0.69 0.714561
Target:  5'- cGGUGUGa--GGCguGCUGcCCGACCGGCu -3'
miRNA:   3'- -CCACACgagCUG--UGGC-GGCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 72192 0.69 0.714561
Target:  5'- cGGUGUagaGCUCGuCGCUGguggUGGCCGACAg -3'
miRNA:   3'- -CCACA---CGAGCuGUGGCg---GCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 90471 0.69 0.714561
Target:  5'- cGGUGUGCUCGaugucggcccagGCGCugaucucggucuCGCCGaACUGAUAg -3'
miRNA:   3'- -CCACACGAGC------------UGUG------------GCGGC-UGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 68446 0.69 0.733858
Target:  5'- aGGUacagGCUgGcCACCGCCGAgggguCCGGCAu -3'
miRNA:   3'- -CCAca--CGAgCuGUGGCGGCU-----GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 139560 0.69 0.733858
Target:  5'- ----cGCgUCGGCGCCGUggaGACCGGCAa -3'
miRNA:   3'- ccacaCG-AGCUGUGGCGg--CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 134108 0.69 0.733858
Target:  5'- cGG-GUGCUCGugGUCGUCGA-CGACGc -3'
miRNA:   3'- -CCaCACGAGCugUGGCGGCUgGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 111432 0.69 0.743383
Target:  5'- cGG-GUGCcagCGGCACCGggggucCCG-CCGACAc -3'
miRNA:   3'- -CCaCACGa--GCUGUGGC------GGCuGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 137490 0.69 0.752817
Target:  5'- aGGuUGUGgUCGuu-CCGCUGACCGAa- -3'
miRNA:   3'- -CC-ACACgAGCuguGGCGGCUGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 74329 0.68 0.762149
Target:  5'- ----cGCUcCGGCACCGCCGguGCCGcCAc -3'
miRNA:   3'- ccacaCGA-GCUGUGGCGGC--UGGCuGU- -5'
19746 5' -57.5 NC_004687.1 + 66493 0.68 0.762149
Target:  5'- gGGUGUGUcCGAgGCCGUCGaggucgcaccgcGCCGAg- -3'
miRNA:   3'- -CCACACGaGCUgUGGCGGC------------UGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 107272 0.68 0.771371
Target:  5'- ----cGC-CGACGCCGaCCGGCuCGACGa -3'
miRNA:   3'- ccacaCGaGCUGUGGC-GGCUG-GCUGU- -5'
19746 5' -57.5 NC_004687.1 + 37785 0.68 0.771371
Target:  5'- ----cGCUgGGCA-CGCUGGCCGACAa -3'
miRNA:   3'- ccacaCGAgCUGUgGCGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 41246 0.68 0.780474
Target:  5'- aGG-GUGCcguacucccCGGCAuaGCCGACCGGCu -3'
miRNA:   3'- -CCaCACGa--------GCUGUggCGGCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 10117 0.68 0.780474
Target:  5'- aGUGUcgaggaGCUCGACGgCGCCauccagaucGACUGGCAc -3'
miRNA:   3'- cCACA------CGAGCUGUgGCGG---------CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 78953 0.68 0.780474
Target:  5'- --gGUGCaCG-CGCCGCaGACCGGCGa -3'
miRNA:   3'- ccaCACGaGCuGUGGCGgCUGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.