miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 3' -57.6 NC_004687.1 + 136497 1.05 0.003144
Target:  5'- cACCUGGAAAAAGGCCACCGGGCCGUUg -3'
miRNA:   3'- -UGGACCUUUUUCCGGUGGCCCGGCAA- -5'
19747 3' -57.6 NC_004687.1 + 21167 0.76 0.288618
Target:  5'- cACCUGGGAGAuggugcucGCCgACCGGGCCGg- -3'
miRNA:   3'- -UGGACCUUUUuc------CGG-UGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 106361 0.74 0.362396
Target:  5'- gACCUcGGu----GGCCACCGGGCCa-- -3'
miRNA:   3'- -UGGA-CCuuuuuCCGGUGGCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 49274 0.74 0.386942
Target:  5'- cGCUUGucGAAGAAGGCCucuUCGGGCCGg- -3'
miRNA:   3'- -UGGAC--CUUUUUCCGGu--GGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 148918 0.74 0.386942
Target:  5'- aACaUGGGAuacGGGGcGCCGCCGGGCCGg- -3'
miRNA:   3'- -UGgACCUU---UUUC-CGGUGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 51678 0.73 0.430207
Target:  5'- cAUCUGGGAGAuGGCCACCGcugcGGCCu-- -3'
miRNA:   3'- -UGGACCUUUUuCCGGUGGC----CCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 64540 0.72 0.466789
Target:  5'- gACCUGGuGGAAGGGCUcgACCGGcGCCa-- -3'
miRNA:   3'- -UGGACC-UUUUUCCGG--UGGCC-CGGcaa -5'
19747 3' -57.6 NC_004687.1 + 8611 0.72 0.466789
Target:  5'- cGCCUGGcAGuccAGGCCgcACCGGGUCGa- -3'
miRNA:   3'- -UGGACCuUUu--UCCGG--UGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 117152 0.72 0.476185
Target:  5'- cGCgCUGGAGGcguAGGcGCCACCGGuGCCGc- -3'
miRNA:   3'- -UG-GACCUUU---UUC-CGGUGGCC-CGGCaa -5'
19747 3' -57.6 NC_004687.1 + 151728 0.72 0.476185
Target:  5'- uCCUGcacucGGAGGGGcGCCGCCGGGCCa-- -3'
miRNA:   3'- uGGAC-----CUUUUUC-CGGUGGCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 8724 0.72 0.476185
Target:  5'- gACCUGGAuuuccGCCACCuGGCCGg- -3'
miRNA:   3'- -UGGACCUuuuucCGGUGGcCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 147740 0.72 0.485673
Target:  5'- gACgaGGAAGAGGcuuccGCCACCGuGGCCGa- -3'
miRNA:   3'- -UGgaCCUUUUUC-----CGGUGGC-CCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 127571 0.71 0.534363
Target:  5'- -gCUGGGAGAgcuuguucugcaGGGCCAuCCGGGCgGUc -3'
miRNA:   3'- ugGACCUUUU------------UCCGGU-GGCCCGgCAa -5'
19747 3' -57.6 NC_004687.1 + 39544 0.71 0.55433
Target:  5'- cGCCUGGc-----GUCGCCGGGCCGg- -3'
miRNA:   3'- -UGGACCuuuuucCGGUGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 48807 0.7 0.574512
Target:  5'- cGCC-GGAc-GGGGCCACCuGGGCCa-- -3'
miRNA:   3'- -UGGaCCUuuUUCCGGUGG-CCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 118321 0.7 0.584668
Target:  5'- aGCCUGGgcGcGGGCCAUggugGGGCUGUUc -3'
miRNA:   3'- -UGGACCuuUuUCCGGUGg---CCCGGCAA- -5'
19747 3' -57.6 NC_004687.1 + 115398 0.7 0.594858
Target:  5'- gGCCcgaGGAGAu-GGCCGCgCGGGCCa-- -3'
miRNA:   3'- -UGGa--CCUUUuuCCGGUG-GCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 1851 0.7 0.614289
Target:  5'- uGCCUGGAAcAGGGCCAgguccCCGgcuauagcgcgauGGCCGa- -3'
miRNA:   3'- -UGGACCUUuUUCCGGU-----GGC-------------CCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 26687 0.69 0.635819
Target:  5'- -gCUGGAc-GAGGCCACCGGcggcuacgacGCCGa- -3'
miRNA:   3'- ugGACCUuuUUCCGGUGGCC----------CGGCaa -5'
19747 3' -57.6 NC_004687.1 + 89376 0.69 0.635819
Target:  5'- cGCCUGGAGcugggacGGGGUCACCGGucGCUGg- -3'
miRNA:   3'- -UGGACCUUu------UUCCGGUGGCC--CGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.