miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 3' -57.6 NC_004687.1 + 36531 0.67 0.76574
Target:  5'- cCCUGGGu--GGGgCACCuGGCCGc- -3'
miRNA:   3'- uGGACCUuuuUCCgGUGGcCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 65206 0.69 0.656314
Target:  5'- cGCCUcaAGGAAGGUgACCGGGUCGg- -3'
miRNA:   3'- -UGGAccUUUUUCCGgUGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 138972 0.69 0.670617
Target:  5'- gACCUGGAGcucggcggcggcagcGGAGGCC-CgGGuGCCGg- -3'
miRNA:   3'- -UGGACCUU---------------UUUCCGGuGgCC-CGGCaa -5'
19747 3' -57.6 NC_004687.1 + 12551 0.69 0.675712
Target:  5'- ---cGGAAGAAGGCCgaccagcugcucgACCaGGCCGUg -3'
miRNA:   3'- uggaCCUUUUUCCGG-------------UGGcCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 104037 0.69 0.67673
Target:  5'- aGCCUGccuGAGGAGGGCgCccagGCCGGGCCc-- -3'
miRNA:   3'- -UGGAC---CUUUUUCCG-G----UGGCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 101564 0.68 0.686887
Target:  5'- gGCCUGGGAcucccGGGCggucugGCCGGuGCCGUa -3'
miRNA:   3'- -UGGACCUUuu---UCCGg-----UGGCC-CGGCAa -5'
19747 3' -57.6 NC_004687.1 + 150409 0.68 0.707057
Target:  5'- uCCcGGAGAucGAGGUCAucCCGGGCUGg- -3'
miRNA:   3'- uGGaCCUUU--UUCCGGU--GGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 68683 0.67 0.746557
Target:  5'- gUCUGGAAGAucGCgucaCGCCGGGCCa-- -3'
miRNA:   3'- uGGACCUUUUucCG----GUGGCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 147849 0.67 0.760032
Target:  5'- uGCCgGGcAAGAGGCgCACCuucccgcacuggccgGGGCCGa- -3'
miRNA:   3'- -UGGaCCuUUUUCCG-GUGG---------------CCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 98196 0.69 0.639921
Target:  5'- cACCUGGcccacauucagcccgGAGGGGGCCAUgCaGGCCGUUc -3'
miRNA:   3'- -UGGACC---------------UUUUUCCGGUG-GcCCGGCAA- -5'
19747 3' -57.6 NC_004687.1 + 89376 0.69 0.635819
Target:  5'- cGCCUGGAGcugggacGGGGUCACCGGucGCUGg- -3'
miRNA:   3'- -UGGACCUUu------UUCCGGUGGCC--CGGCaa -5'
19747 3' -57.6 NC_004687.1 + 26687 0.69 0.635819
Target:  5'- -gCUGGAc-GAGGCCACCGGcggcuacgacGCCGa- -3'
miRNA:   3'- ugGACCUuuUUCCGGUGGCC----------CGGCaa -5'
19747 3' -57.6 NC_004687.1 + 148918 0.74 0.386942
Target:  5'- aACaUGGGAuacGGGGcGCCGCCGGGCCGg- -3'
miRNA:   3'- -UGgACCUU---UUUC-CGGUGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 8611 0.72 0.466789
Target:  5'- cGCCUGGcAGuccAGGCCgcACCGGGUCGa- -3'
miRNA:   3'- -UGGACCuUUu--UCCGG--UGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 64540 0.72 0.466789
Target:  5'- gACCUGGuGGAAGGGCUcgACCGGcGCCa-- -3'
miRNA:   3'- -UGGACC-UUUUUCCGG--UGGCC-CGGcaa -5'
19747 3' -57.6 NC_004687.1 + 151728 0.72 0.476185
Target:  5'- uCCUGcacucGGAGGGGcGCCGCCGGGCCa-- -3'
miRNA:   3'- uGGAC-----CUUUUUC-CGGUGGCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 147740 0.72 0.485673
Target:  5'- gACgaGGAAGAGGcuuccGCCACCGuGGCCGa- -3'
miRNA:   3'- -UGgaCCUUUUUC-----CGGUGGC-CCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 39544 0.71 0.55433
Target:  5'- cGCCUGGc-----GUCGCCGGGCCGg- -3'
miRNA:   3'- -UGGACCuuuuucCGGUGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 115398 0.7 0.594858
Target:  5'- gGCCcgaGGAGAu-GGCCGCgCGGGCCa-- -3'
miRNA:   3'- -UGGa--CCUUUuuCCGGUG-GCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 1851 0.7 0.614289
Target:  5'- uGCCUGGAAcAGGGCCAgguccCCGgcuauagcgcgauGGCCGa- -3'
miRNA:   3'- -UGGACCUUuUUCCGGU-----GGC-------------CCGGCaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.