miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 3' -57.6 NC_004687.1 + 1105 0.67 0.746557
Target:  5'- uGCUUGGucc-GGGCgC-CCGGGCCGa- -3'
miRNA:   3'- -UGGACCuuuuUCCG-GuGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 1851 0.7 0.614289
Target:  5'- uGCCUGGAAcAGGGCCAgguccCCGgcuauagcgcgauGGCCGa- -3'
miRNA:   3'- -UGGACCUUuUUCCGGU-----GGC-------------CCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 2043 0.66 0.836165
Target:  5'- uACCgacuGAGGAAGGUCACCGccccgugcaggaaGGCCGa- -3'
miRNA:   3'- -UGGac--CUUUUUCCGGUGGC-------------CCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 2940 0.66 0.811453
Target:  5'- cACCUGGG---AGGCCuucACCcGGUCGUa -3'
miRNA:   3'- -UGGACCUuuuUCCGG---UGGcCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 8611 0.72 0.466789
Target:  5'- cGCCUGGcAGuccAGGCCgcACCGGGUCGa- -3'
miRNA:   3'- -UGGACCuUUu--UCCGG--UGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 8724 0.72 0.476185
Target:  5'- gACCUGGAuuuccGCCACCuGGCCGg- -3'
miRNA:   3'- -UGGACCUuuuucCGGUGGcCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 9286 0.67 0.764792
Target:  5'- gGCCUGGAAGGcagcgauggcguuGGG-CACCGGcGCCu-- -3'
miRNA:   3'- -UGGACCUUUU-------------UCCgGUGGCC-CGGcaa -5'
19747 3' -57.6 NC_004687.1 + 9801 0.66 0.828655
Target:  5'- gACCcaugGGAAAuGGcGCCGCCGGGUa--- -3'
miRNA:   3'- -UGGa---CCUUUuUC-CGGUGGCCCGgcaa -5'
19747 3' -57.6 NC_004687.1 + 12551 0.69 0.675712
Target:  5'- ---cGGAAGAAGGCCgaccagcugcucgACCaGGCCGUg -3'
miRNA:   3'- uggaCCUUUUUCCGG-------------UGGcCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 14980 0.66 0.802602
Target:  5'- uCgUGGA---GGGCCgcgaagagaGCUGGGCCGUg -3'
miRNA:   3'- uGgACCUuuuUCCGG---------UGGCCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 16443 0.66 0.799917
Target:  5'- cCCUGGAGAAgaucgacggcaccuGGGUCGCCcGGGugaCCGUc -3'
miRNA:   3'- uGGACCUUUU--------------UCCGGUGG-CCC---GGCAa -5'
19747 3' -57.6 NC_004687.1 + 18086 0.66 0.820139
Target:  5'- aACCUcGuc-GAGGcCCGCCGGGCCc-- -3'
miRNA:   3'- -UGGAcCuuuUUCC-GGUGGCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 18760 0.68 0.73681
Target:  5'- -gCUGGGAuugguguAGGCCACCGGGaucucCCGc- -3'
miRNA:   3'- ugGACCUUuu-----UCCGGUGGCCC-----GGCaa -5'
19747 3' -57.6 NC_004687.1 + 19935 0.66 0.83699
Target:  5'- cGCCUGGAGGccaagaccGAcGGCCACUGGucaCCGa- -3'
miRNA:   3'- -UGGACCUUU--------UU-CCGGUGGCCc--GGCaa -5'
19747 3' -57.6 NC_004687.1 + 20065 0.67 0.793597
Target:  5'- gAUgUGGgcGAuucgugagcugcAGGCCuACCGGGCCGc- -3'
miRNA:   3'- -UGgACCuuUU------------UCCGG-UGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 21167 0.76 0.288618
Target:  5'- cACCUGGGAGAuggugcucGCCgACCGGGCCGg- -3'
miRNA:   3'- -UGGACCUUUUuc------CGG-UGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 26687 0.69 0.635819
Target:  5'- -gCUGGAc-GAGGCCACCGGcggcuacgacGCCGa- -3'
miRNA:   3'- ugGACCUuuUUCCGGUGGCC----------CGGCaa -5'
19747 3' -57.6 NC_004687.1 + 30535 0.66 0.811453
Target:  5'- aACCggucgcGGAAcuuGGCCACgcugcaCGGGCCGUc -3'
miRNA:   3'- -UGGa-----CCUUuuuCCGGUG------GCCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 35637 0.66 0.820139
Target:  5'- cGCCgGGGucguGGGCCuuggaGCCGGaGCCGa- -3'
miRNA:   3'- -UGGaCCUuuu-UCCGG-----UGGCC-CGGCaa -5'
19747 3' -57.6 NC_004687.1 + 36531 0.67 0.76574
Target:  5'- cCCUGGGu--GGGgCACCuGGCCGc- -3'
miRNA:   3'- uGGACCUuuuUCCgGUGGcCCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.