miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 5' -53.6 NC_004687.1 + 136533 1.11 0.003825
Target:  5'- aUGAACCGGAACCCAGAAGACUCCGUCg -3'
miRNA:   3'- -ACUUGGCCUUGGGUCUUCUGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 17239 0.79 0.361354
Target:  5'- --cGCCGGAGCCCAcguuGAGGACggugCCGUCc -3'
miRNA:   3'- acuUGGCCUUGGGU----CUUCUGa---GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 143162 0.75 0.575707
Target:  5'- aGGugCGGAAUCCGGggGAgUCCcacucGUCg -3'
miRNA:   3'- aCUugGCCUUGGGUCuuCUgAGG-----CAG- -5'
19747 5' -53.6 NC_004687.1 + 150421 0.75 0.584948
Target:  5'- gGAcucGCUGGGcacguggccguagGCCCAGAAGACgucgCCGUCc -3'
miRNA:   3'- aCU---UGGCCU-------------UGGGUCUUCUGa---GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 28247 0.72 0.738663
Target:  5'- cGAGCuCGGcgacaccGACCCGGAcaGGGCUCCG-Ca -3'
miRNA:   3'- aCUUG-GCC-------UUGGGUCU--UCUGAGGCaG- -5'
19747 5' -53.6 NC_004687.1 + 149841 0.72 0.759192
Target:  5'- -cGACCGGGAUgCAGGu--CUCCGUCa -3'
miRNA:   3'- acUUGGCCUUGgGUCUucuGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 45438 0.71 0.777329
Target:  5'- gGGGCCGGAaguccucGCCCucGAAGACUUCuUCg -3'
miRNA:   3'- aCUUGGCCU-------UGGGu-CUUCUGAGGcAG- -5'
19747 5' -53.6 NC_004687.1 + 67607 0.71 0.796813
Target:  5'- -cGGCUGGGACCCcGAGGAC-CCGcCg -3'
miRNA:   3'- acUUGGCCUUGGGuCUUCUGaGGCaG- -5'
19747 5' -53.6 NC_004687.1 + 118851 0.71 0.814745
Target:  5'- aGAACCGGAAUaCCAG-GGACacugCCGUg -3'
miRNA:   3'- aCUUGGCCUUG-GGUCuUCUGa---GGCAg -5'
19747 5' -53.6 NC_004687.1 + 148525 0.7 0.840348
Target:  5'- gGAGCUGGAGCugaaguuccuCCAGGAGAagguCUCCGg- -3'
miRNA:   3'- aCUUGGCCUUG----------GGUCUUCU----GAGGCag -5'
19747 5' -53.6 NC_004687.1 + 132993 0.7 0.840348
Target:  5'- cUGAacaGCCGGuggggcGAUCCGGAGG-UUCCGUCu -3'
miRNA:   3'- -ACU---UGGCC------UUGGGUCUUCuGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 116274 0.7 0.856459
Target:  5'- gGGGCCGGucgGACCCAGcGGg--CCGUCu -3'
miRNA:   3'- aCUUGGCC---UUGGGUCuUCugaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 21170 0.69 0.864205
Target:  5'- --cACUGGGACCCAGGAGGCgaCgGUg -3'
miRNA:   3'- acuUGGCCUUGGGUCUUCUGa-GgCAg -5'
19747 5' -53.6 NC_004687.1 + 34030 0.69 0.864205
Target:  5'- ---cCUGGAACCCGGAAGGC-CUGg- -3'
miRNA:   3'- acuuGGCCUUGGGUCUUCUGaGGCag -5'
19747 5' -53.6 NC_004687.1 + 122650 0.69 0.864205
Target:  5'- aGAGCUcuuccuaguuGGGACCCGGAcaaGGACggUCCGUa -3'
miRNA:   3'- aCUUGG----------CCUUGGGUCU---UCUG--AGGCAg -5'
19747 5' -53.6 NC_004687.1 + 63733 0.69 0.871737
Target:  5'- -cAACCGGuuACCCcGAGGACUUCGa- -3'
miRNA:   3'- acUUGGCCu-UGGGuCUUCUGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 78595 0.69 0.878328
Target:  5'- cUGAccGCCGGGgcGCCCGGAGccaccgcGAUUCCGg- -3'
miRNA:   3'- -ACU--UGGCCU--UGGGUCUU-------CUGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 106797 0.69 0.879049
Target:  5'- -uGACCGGGACCCAc--GGCUCUGg- -3'
miRNA:   3'- acUUGGCCUUGGGUcuuCUGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 20814 0.69 0.879049
Target:  5'- cGAACCaGAACuCCAGggG-CUCgGUg -3'
miRNA:   3'- aCUUGGcCUUG-GGUCuuCuGAGgCAg -5'
19747 5' -53.6 NC_004687.1 + 64815 0.69 0.886135
Target:  5'- cGGGCCGGuacgcGACCCacacGGucGACUCCGa- -3'
miRNA:   3'- aCUUGGCC-----UUGGG----UCuuCUGAGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.