miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 5' -53.6 NC_004687.1 + 14747 0.67 0.954109
Target:  5'- -uGGCCGGAAUCCGGcccauggcauccagcGGGGCgaugCCGUUg -3'
miRNA:   3'- acUUGGCCUUGGGUC---------------UUCUGa---GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 15879 0.66 0.972064
Target:  5'- aGGACCGGGcaccgacgucggcuGCCgAGAGGACcacggugCCGgUCu -3'
miRNA:   3'- aCUUGGCCU--------------UGGgUCUUCUGa------GGC-AG- -5'
19747 5' -53.6 NC_004687.1 + 17239 0.79 0.361354
Target:  5'- --cGCCGGAGCCCAcguuGAGGACggugCCGUCc -3'
miRNA:   3'- acuUGGCCUUGGGU----CUUCUGa---GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 18094 0.66 0.966013
Target:  5'- cGAggcccGCCGGGcccugaccgaguucGCCCGGGcgcgcGGGCUgCGUCu -3'
miRNA:   3'- aCU-----UGGCCU--------------UGGGUCU-----UCUGAgGCAG- -5'
19747 5' -53.6 NC_004687.1 + 18635 0.68 0.912137
Target:  5'- --uGCCGGGACCC-GAAGAC-CCa-- -3'
miRNA:   3'- acuUGGCCUUGGGuCUUCUGaGGcag -5'
19747 5' -53.6 NC_004687.1 + 18763 0.67 0.948299
Target:  5'- cGcGCCGGGcuGCCCugGGAGGACgacgaggucgcCCGUCu -3'
miRNA:   3'- aCuUGGCCU--UGGG--UCUUCUGa----------GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 20003 0.66 0.9729
Target:  5'- --uACUGGGACgaAGAGGACUCCa-- -3'
miRNA:   3'- acuUGGCCUUGggUCUUCUGAGGcag -5'
19747 5' -53.6 NC_004687.1 + 20814 0.69 0.879049
Target:  5'- cGAACCaGAACuCCAGggG-CUCgGUg -3'
miRNA:   3'- aCUUGGcCUUG-GGUCuuCuGAGgCAg -5'
19747 5' -53.6 NC_004687.1 + 20868 0.67 0.952496
Target:  5'- cGcGCCGGGcccugGCCCGcgucGAGGACgCCGUUg -3'
miRNA:   3'- aCuUGGCCU-----UGGGU----CUUCUGaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 21170 0.69 0.864205
Target:  5'- --cACUGGGACCCAGGAGGCgaCgGUg -3'
miRNA:   3'- acuUGGCCUUGGGUCUUCUGa-GgCAg -5'
19747 5' -53.6 NC_004687.1 + 21365 0.66 0.970042
Target:  5'- -uGAUCGGccaGGCUCAGAaaGGGCUCCGg- -3'
miRNA:   3'- acUUGGCC---UUGGGUCU--UCUGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 21463 0.66 0.970042
Target:  5'- aUGAGCgGGcugacaccGACCCAGGAG-CU-CGUCc -3'
miRNA:   3'- -ACUUGgCC--------UUGGGUCUUCuGAgGCAG- -5'
19747 5' -53.6 NC_004687.1 + 24603 0.66 0.960189
Target:  5'- cGAGCUGGuccgcAgCCAGGucaaGGACgCCGUCg -3'
miRNA:   3'- aCUUGGCCu----UgGGUCU----UCUGaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 28247 0.72 0.738663
Target:  5'- cGAGCuCGGcgacaccGACCCGGAcaGGGCUCCG-Ca -3'
miRNA:   3'- aCUUG-GCC-------UUGGGUCU--UCUGAGGCaG- -5'
19747 5' -53.6 NC_004687.1 + 33818 0.68 0.920328
Target:  5'- aGGACCGcGAcGCCCcgguacaggccauccAGGAGaccuacGCUCCGUCg -3'
miRNA:   3'- aCUUGGC-CU-UGGG---------------UCUUC------UGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 33917 0.66 0.9729
Target:  5'- --cGCCGGAcuccucgauAUCCGGAGGugUUCGcUCu -3'
miRNA:   3'- acuUGGCCU---------UGGGUCUUCugAGGC-AG- -5'
19747 5' -53.6 NC_004687.1 + 34030 0.69 0.864205
Target:  5'- ---cCUGGAACCCGGAAGGC-CUGg- -3'
miRNA:   3'- acuuGGCCUUGGGUCUUCUGaGGCag -5'
19747 5' -53.6 NC_004687.1 + 36925 0.66 0.956458
Target:  5'- -cGACCGGuccuCCCGGA-GGCUUCGcCg -3'
miRNA:   3'- acUUGGCCuu--GGGUCUuCUGAGGCaG- -5'
19747 5' -53.6 NC_004687.1 + 37010 0.69 0.89299
Target:  5'- aGAuCCGGcgcgucgguccGGCCCaaAGAAGcCUCCGUCc -3'
miRNA:   3'- aCUuGGCC-----------UUGGG--UCUUCuGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 40458 0.68 0.912137
Target:  5'- gGAACCGGAaguGCCCGcc-GACgUCGUCg -3'
miRNA:   3'- aCUUGGCCU---UGGGUcuuCUGaGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.