miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 5' -53.6 NC_004687.1 + 84900 0.67 0.939187
Target:  5'- cGAGCCGGAGgucgucgagacCCCGGGcccAGACgCgGUCc -3'
miRNA:   3'- aCUUGGCCUU-----------GGGUCU---UCUGaGgCAG- -5'
19747 5' -53.6 NC_004687.1 + 72413 0.69 0.89299
Target:  5'- cGAGuuGGucuGCCCuGGcgGGACUCgGUCa -3'
miRNA:   3'- aCUUggCCu--UGGGuCU--UCUGAGgCAG- -5'
19747 5' -53.6 NC_004687.1 + 153320 0.69 0.89299
Target:  5'- gGcGCUGGucgGCCCcGGAGGCUCCGg- -3'
miRNA:   3'- aCuUGGCCu--UGGGuCUUCUGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 56323 0.69 0.89299
Target:  5'- aGAccguCCGG-ACCCGGAccugcgccGGGCUCCGa- -3'
miRNA:   3'- aCUu---GGCCuUGGGUCU--------UCUGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 120977 0.68 0.905995
Target:  5'- aGGACCGGAcgaucACUCAGGAGAUgacgCUGa- -3'
miRNA:   3'- aCUUGGCCU-----UGGGUCUUCUGa---GGCag -5'
19747 5' -53.6 NC_004687.1 + 90740 0.68 0.918037
Target:  5'- -uGGCCGGGcuguaaaCCAGggGACUCCa-- -3'
miRNA:   3'- acUUGGCCUug-----GGUCuuCUGAGGcag -5'
19747 5' -53.6 NC_004687.1 + 33818 0.68 0.920328
Target:  5'- aGGACCGcGAcGCCCcgguacaggccauccAGGAGaccuacGCUCCGUCg -3'
miRNA:   3'- aCUUGGC-CU-UGGG---------------UCUUC------UGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 79863 0.68 0.927505
Target:  5'- gGGACUGGGagaacggcuucaccACCCAGAuGACcaucauggcgCCGUCg -3'
miRNA:   3'- aCUUGGCCU--------------UGGGUCUuCUGa---------GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 103524 0.67 0.939187
Target:  5'- aGAA-CGGAGCCCcuacggcuggcAGGccugGGGCUCCGUUu -3'
miRNA:   3'- aCUUgGCCUUGGG-----------UCU----UCUGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 37010 0.69 0.89299
Target:  5'- aGAuCCGGcgcgucgguccGGCCCaaAGAAGcCUCCGUCc -3'
miRNA:   3'- aCUuGGCC-----------UUGGG--UCUUCuGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 60114 0.69 0.886135
Target:  5'- uUGAaccGCCGGggUCCGGucauGGuCUCgGUCu -3'
miRNA:   3'- -ACU---UGGCCuuGGGUCu---UCuGAGgCAG- -5'
19747 5' -53.6 NC_004687.1 + 106797 0.69 0.879049
Target:  5'- -uGACCGGGACCCAc--GGCUCUGg- -3'
miRNA:   3'- acUUGGCCUUGGGUcuuCUGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 67607 0.71 0.796813
Target:  5'- -cGGCUGGGACCCcGAGGAC-CCGcCg -3'
miRNA:   3'- acUUGGCCUUGGGuCUUCUGaGGCaG- -5'
19747 5' -53.6 NC_004687.1 + 118851 0.71 0.814745
Target:  5'- aGAACCGGAAUaCCAG-GGACacugCCGUg -3'
miRNA:   3'- aCUUGGCCUUG-GGUCuUCUGa---GGCAg -5'
19747 5' -53.6 NC_004687.1 + 148525 0.7 0.840348
Target:  5'- gGAGCUGGAGCugaaguuccuCCAGGAGAagguCUCCGg- -3'
miRNA:   3'- aCUUGGCCUUG----------GGUCUUCU----GAGGCag -5'
19747 5' -53.6 NC_004687.1 + 132993 0.7 0.840348
Target:  5'- cUGAacaGCCGGuggggcGAUCCGGAGG-UUCCGUCu -3'
miRNA:   3'- -ACU---UGGCC------UUGGGUCUUCuGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 122650 0.69 0.864205
Target:  5'- aGAGCUcuuccuaguuGGGACCCGGAcaaGGACggUCCGUa -3'
miRNA:   3'- aCUUGG----------CCUUGGGUCU---UCUG--AGGCAg -5'
19747 5' -53.6 NC_004687.1 + 34030 0.69 0.864205
Target:  5'- ---cCUGGAACCCGGAAGGC-CUGg- -3'
miRNA:   3'- acuuGGCCUUGGGUCUUCUGaGGCag -5'
19747 5' -53.6 NC_004687.1 + 63733 0.69 0.871737
Target:  5'- -cAACCGGuuACCCcGAGGACUUCGa- -3'
miRNA:   3'- acUUGGCCu-UGGGuCUUCUGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 78595 0.69 0.878328
Target:  5'- cUGAccGCCGGGgcGCCCGGAGccaccgcGAUUCCGg- -3'
miRNA:   3'- -ACU--UGGCCU--UGGGUCUU-------CUGAGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.