miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19749 5' -62.1 NC_004687.1 + 135186 1.11 0.000633
Target:  5'- cCGGGGUCAGCGGCAGCGGACGUGCGCg -3'
miRNA:   3'- -GCCCCAGUCGCCGUCGCCUGCACGCG- -5'
19749 5' -62.1 NC_004687.1 + 132466 0.8 0.107853
Target:  5'- gCGGGGUCGagacuuccGgGGCAGCGGGCGccuggacgGCGCa -3'
miRNA:   3'- -GCCCCAGU--------CgCCGUCGCCUGCa-------CGCG- -5'
19749 5' -62.1 NC_004687.1 + 116983 0.79 0.128367
Target:  5'- gCGGGGUgGGCGuGCacccGGCGGGCGUGCu- -3'
miRNA:   3'- -GCCCCAgUCGC-CG----UCGCCUGCACGcg -5'
19749 5' -62.1 NC_004687.1 + 80458 0.76 0.189367
Target:  5'- uCGGcGGUCuGCGGCAGCucGGCGggaGCGCg -3'
miRNA:   3'- -GCC-CCAGuCGCCGUCGc-CUGCa--CGCG- -5'
19749 5' -62.1 NC_004687.1 + 124115 0.75 0.213125
Target:  5'- aCGGGGUCu-CaGCAGCGGugaucCGUGCGCc -3'
miRNA:   3'- -GCCCCAGucGcCGUCGCCu----GCACGCG- -5'
19749 5' -62.1 NC_004687.1 + 81974 0.75 0.228578
Target:  5'- aCGGcGcCGGUGGCGGCGGugGUG-GCg -3'
miRNA:   3'- -GCCcCaGUCGCCGUCGCCugCACgCG- -5'
19749 5' -62.1 NC_004687.1 + 79084 0.74 0.256429
Target:  5'- aGGcuuUCAGCGGCGGCGGcGCG-GCGCc -3'
miRNA:   3'- gCCcc-AGUCGCCGUCGCC-UGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 10716 0.74 0.268325
Target:  5'- uGGGGUCGGCgcccuGGcCAGCGGccacccgcGCGaUGCGCc -3'
miRNA:   3'- gCCCCAGUCG-----CC-GUCGCC--------UGC-ACGCG- -5'
19749 5' -62.1 NC_004687.1 + 42500 0.73 0.286999
Target:  5'- uGcGGGUCGGCGGUguuaGGCGGgAUGaGCGCc -3'
miRNA:   3'- gC-CCCAGUCGCCG----UCGCC-UGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 45819 0.72 0.313467
Target:  5'- uCGGcGGgCGGCGGCAuccagcgcGcCGGACGUGgCGCg -3'
miRNA:   3'- -GCC-CCaGUCGCCGU--------C-GCCUGCAC-GCG- -5'
19749 5' -62.1 NC_004687.1 + 104659 0.72 0.313467
Target:  5'- gGGGGUCAGCGuguccucCAGCaGGACGUuaCGCa -3'
miRNA:   3'- gCCCCAGUCGCc------GUCG-CCUGCAc-GCG- -5'
19749 5' -62.1 NC_004687.1 + 82031 0.72 0.327379
Target:  5'- aCGGuacCGGCGGUAGCGGugGcaGCGCg -3'
miRNA:   3'- -GCCccaGUCGCCGUCGCCugCa-CGCG- -5'
19749 5' -62.1 NC_004687.1 + 81202 0.72 0.327379
Target:  5'- uCGGGGUCaAGCuGCAGCgcccGGugGUGUucaGCa -3'
miRNA:   3'- -GCCCCAG-UCGcCGUCG----CCugCACG---CG- -5'
19749 5' -62.1 NC_004687.1 + 79126 0.72 0.334504
Target:  5'- -cGGGUCuG-GGCGGCGGcACG-GCGCa -3'
miRNA:   3'- gcCCCAGuCgCCGUCGCC-UGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 96223 0.72 0.34467
Target:  5'- aGGGGccuucggcaggguguUCAGCGGUAGCGGGCGa---- -3'
miRNA:   3'- gCCCC---------------AGUCGCCGUCGCCUGCacgcg -5'
19749 5' -62.1 NC_004687.1 + 111559 0.72 0.349094
Target:  5'- uCGGGG-CGGCGGU-GCGGAaGUGCa- -3'
miRNA:   3'- -GCCCCaGUCGCCGuCGCCUgCACGcg -5'
19749 5' -62.1 NC_004687.1 + 66680 0.72 0.349094
Target:  5'- cCGGGGcucgauccuggUCGGCGGCGGCaucuauuccGGCG-GCGCg -3'
miRNA:   3'- -GCCCC-----------AGUCGCCGUCGc--------CUGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 78313 0.72 0.349094
Target:  5'- uGGGGcaCGGUGGCccAGCGGAUGaacccGCGCg -3'
miRNA:   3'- gCCCCa-GUCGCCG--UCGCCUGCa----CGCG- -5'
19749 5' -62.1 NC_004687.1 + 112485 0.71 0.356556
Target:  5'- uGGGGUCGaCGGCAGCGGugacauCGaUGUaGCg -3'
miRNA:   3'- gCCCCAGUcGCCGUCGCCu-----GC-ACG-CG- -5'
19749 5' -62.1 NC_004687.1 + 128384 0.71 0.364131
Target:  5'- aCGGcgagUAGCGGCAGCgGGugGaUGCGCc -3'
miRNA:   3'- -GCCcca-GUCGCCGUCG-CCugC-ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.