miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19749 5' -62.1 NC_004687.1 + 546 0.66 0.662312
Target:  5'- aGGucGG-CAGCGGCgggGGCGGG-GUGgGCa -3'
miRNA:   3'- gCC--CCaGUCGCCG---UCGCCUgCACgCG- -5'
19749 5' -62.1 NC_004687.1 + 4542 0.67 0.593197
Target:  5'- gCGGGGcCAGaaccugagcacCGGCaagccgaAGCGaGGCGUGCGg -3'
miRNA:   3'- -GCCCCaGUC-----------GCCG-------UCGC-CUGCACGCg -5'
19749 5' -62.1 NC_004687.1 + 6063 0.66 0.680723
Target:  5'- uGGGcGUCGGCGaCGGCGaucuggcgggcccGACGgGCGUa -3'
miRNA:   3'- gCCC-CAGUCGCcGUCGC-------------CUGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 6748 0.67 0.603878
Target:  5'- uCGGuGGUCAuGCGGC-GCGGGgcUGUG-GCc -3'
miRNA:   3'- -GCC-CCAGU-CGCCGuCGCCU--GCACgCG- -5'
19749 5' -62.1 NC_004687.1 + 7266 0.67 0.574827
Target:  5'- uGGcGUacCAGCGGUccAGCGaGGCGUGCaGCa -3'
miRNA:   3'- gCCcCA--GUCGCCG--UCGC-CUGCACG-CG- -5'
19749 5' -62.1 NC_004687.1 + 7821 0.66 0.672015
Target:  5'- aGGGGUCGGCGuGCGcGCGGuagaGCa- -3'
miRNA:   3'- gCCCCAGUCGC-CGU-CGCCugcaCGcg -5'
19749 5' -62.1 NC_004687.1 + 8036 0.67 0.593197
Target:  5'- uGGGGUCGGgcuuguacuggauCGGCcccggccaguGCGGGaagGUGCGCc -3'
miRNA:   3'- gCCCCAGUC-------------GCCGu---------CGCCUg--CACGCG- -5'
19749 5' -62.1 NC_004687.1 + 10716 0.74 0.268325
Target:  5'- uGGGGUCGGCgcccuGGcCAGCGGccacccgcGCGaUGCGCc -3'
miRNA:   3'- gCCCCAGUCG-----CC-GUCGCC--------UGC-ACGCG- -5'
19749 5' -62.1 NC_004687.1 + 13000 0.7 0.427766
Target:  5'- uCGGGGUCAGCaaacGGCAGCGcGGugaacauacUGUaggucuuGCGCg -3'
miRNA:   3'- -GCCCCAGUCG----CCGUCGC-CU---------GCA-------CGCG- -5'
19749 5' -62.1 NC_004687.1 + 13204 0.67 0.574827
Target:  5'- -aGGG-CGGCGagaGCAGCGu-CGUGCGCc -3'
miRNA:   3'- gcCCCaGUCGC---CGUCGCcuGCACGCG- -5'
19749 5' -62.1 NC_004687.1 + 17092 0.67 0.591258
Target:  5'- cCGGcGcCAGCGGaucgucacCGGCGGacgcaugacucgcgGCGUGCGCg -3'
miRNA:   3'- -GCCcCaGUCGCC--------GUCGCC--------------UGCACGCG- -5'
19749 5' -62.1 NC_004687.1 + 17473 0.67 0.62335
Target:  5'- uCGGGGUgucggcgucaCGGgcgcccacguCGGCAGCGGACagcaccacgGCGCc -3'
miRNA:   3'- -GCCCCA----------GUC----------GCCGUCGCCUGca-------CGCG- -5'
19749 5' -62.1 NC_004687.1 + 17847 0.66 0.691326
Target:  5'- -aGGGUCAGCGuGUGGuUGGuC-UGCGCg -3'
miRNA:   3'- gcCCCAGUCGC-CGUC-GCCuGcACGCG- -5'
19749 5' -62.1 NC_004687.1 + 24966 0.71 0.371816
Target:  5'- -cGGGUCAgacGCGGCAGCuGGCGcaugaGCGCc -3'
miRNA:   3'- gcCCCAGU---CGCCGUCGcCUGCa----CGCG- -5'
19749 5' -62.1 NC_004687.1 + 27841 0.67 0.588352
Target:  5'- gCGGGGUCGGCGcgaccggguuGCccuuGCGGGCccgggccucguggaaGUcGCGCg -3'
miRNA:   3'- -GCCCCAGUCGC----------CGu---CGCCUG---------------CA-CGCG- -5'
19749 5' -62.1 NC_004687.1 + 34177 0.68 0.536633
Target:  5'- aGGGauaUCAGCGuCAGCGcGACGUaaagaaGCGCa -3'
miRNA:   3'- gCCCc--AGUCGCcGUCGC-CUGCA------CGCG- -5'
19749 5' -62.1 NC_004687.1 + 40961 0.69 0.475756
Target:  5'- -cGGGUCugcGUGGCAGCccGGACGUcgacggcaggugcugGCGCc -3'
miRNA:   3'- gcCCCAGu--CGCCGUCG--CCUGCA---------------CGCG- -5'
19749 5' -62.1 NC_004687.1 + 41540 0.68 0.555635
Target:  5'- uCGGGGUCcuCGGCGuGCaGGCuGgggGCGCa -3'
miRNA:   3'- -GCCCCAGucGCCGU-CGcCUG-Ca--CGCG- -5'
19749 5' -62.1 NC_004687.1 + 42500 0.73 0.286999
Target:  5'- uGcGGGUCGGCGGUguuaGGCGGgAUGaGCGCc -3'
miRNA:   3'- gC-CCCAGUCGCCG----UCGCC-UGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 43183 0.68 0.536633
Target:  5'- uGGGG-CGGgGGcCGGUcuGGGCGggGCGCu -3'
miRNA:   3'- gCCCCaGUCgCC-GUCG--CCUGCa-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.