miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19749 5' -62.1 NC_004687.1 + 45877 0.68 0.565209
Target:  5'- uGGuGGUCcGCGaGCAGCguccggguGGGCGUuagccGCGCa -3'
miRNA:   3'- gCC-CCAGuCGC-CGUCG--------CCUGCA-----CGCG- -5'
19749 5' -62.1 NC_004687.1 + 73740 0.69 0.490217
Target:  5'- uCGGcGUCucgccgaugaccGGCGGCAGCGGGCccgGCGg -3'
miRNA:   3'- -GCCcCAG------------UCGCCGUCGCCUGca-CGCg -5'
19749 5' -62.1 NC_004687.1 + 81645 0.69 0.508575
Target:  5'- gCGGcGG-CGGCGGUGGUGGagGCGgcgGUGCu -3'
miRNA:   3'- -GCC-CCaGUCGCCGUCGCC--UGCa--CGCG- -5'
19749 5' -62.1 NC_004687.1 + 138983 0.68 0.527217
Target:  5'- --cGG-CGGCGGCAGCGGAgGcccggGUGCc -3'
miRNA:   3'- gccCCaGUCGCCGUCGCCUgCa----CGCG- -5'
19749 5' -62.1 NC_004687.1 + 34177 0.68 0.536633
Target:  5'- aGGGauaUCAGCGuCAGCGcGACGUaaagaaGCGCa -3'
miRNA:   3'- gCCCc--AGUCGCcGUCGC-CUGCA------CGCG- -5'
19749 5' -62.1 NC_004687.1 + 43183 0.68 0.536633
Target:  5'- uGGGG-CGGgGGcCGGUcuGGGCGggGCGCu -3'
miRNA:   3'- gCCCCaGUCgCC-GUCG--CCUGCa-CGCG- -5'
19749 5' -62.1 NC_004687.1 + 142496 0.68 0.536633
Target:  5'- gCGGGccuccaaGGCGGCGGUGGACGc-CGCc -3'
miRNA:   3'- -GCCCcag----UCGCCGUCGCCUGCacGCG- -5'
19749 5' -62.1 NC_004687.1 + 108027 0.68 0.536633
Target:  5'- uCGGcGGUcCAGCgGGCGGCGGGCugacucucgGCGg -3'
miRNA:   3'- -GCC-CCA-GUCG-CCGUCGCCUGca-------CGCg -5'
19749 5' -62.1 NC_004687.1 + 118646 0.68 0.540416
Target:  5'- cCGGuGGUCuGCgaggugaucaagcucGGCGGCGG-CG-GCGCc -3'
miRNA:   3'- -GCC-CCAGuCG---------------CCGUCGCCuGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 40961 0.69 0.475756
Target:  5'- -cGGGUCugcGUGGCAGCccGGACGUcgacggcaggugcugGCGCc -3'
miRNA:   3'- gcCCCAGu--CGCCGUCG--CCUGCA---------------CGCG- -5'
19749 5' -62.1 NC_004687.1 + 137247 0.69 0.472174
Target:  5'- cCGGGGagAcCGGCaAGCGcGACG-GCGCc -3'
miRNA:   3'- -GCCCCagUcGCCG-UCGC-CUGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 89390 0.71 0.395524
Target:  5'- aCGGGGUCAcCGGUcGCuGGC-UGCGCg -3'
miRNA:   3'- -GCCCCAGUcGCCGuCGcCUGcACGCG- -5'
19749 5' -62.1 NC_004687.1 + 81974 0.75 0.228578
Target:  5'- aCGGcGcCGGUGGCGGCGGugGUG-GCg -3'
miRNA:   3'- -GCCcCaGUCGCCGUCGCCugCACgCG- -5'
19749 5' -62.1 NC_004687.1 + 79084 0.74 0.256429
Target:  5'- aGGcuuUCAGCGGCGGCGGcGCG-GCGCc -3'
miRNA:   3'- gCCcc-AGUCGCCGUCGCC-UGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 45819 0.72 0.313467
Target:  5'- uCGGcGGgCGGCGGCAuccagcgcGcCGGACGUGgCGCg -3'
miRNA:   3'- -GCC-CCaGUCGCCGU--------C-GCCUGCAC-GCG- -5'
19749 5' -62.1 NC_004687.1 + 81202 0.72 0.327379
Target:  5'- uCGGGGUCaAGCuGCAGCgcccGGugGUGUucaGCa -3'
miRNA:   3'- -GCCCCAG-UCGcCGUCG----CCugCACG---CG- -5'
19749 5' -62.1 NC_004687.1 + 82031 0.72 0.327379
Target:  5'- aCGGuacCGGCGGUAGCGGugGcaGCGCg -3'
miRNA:   3'- -GCCccaGUCGCCGUCGCCugCa-CGCG- -5'
19749 5' -62.1 NC_004687.1 + 79126 0.72 0.334504
Target:  5'- -cGGGUCuG-GGCGGCGGcACG-GCGCa -3'
miRNA:   3'- gcCCCAGuCgCCGUCGCC-UGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 78313 0.72 0.349094
Target:  5'- uGGGGcaCGGUGGCccAGCGGAUGaacccGCGCg -3'
miRNA:   3'- gCCCCa-GUCGCCG--UCGCCUGCa----CGCG- -5'
19749 5' -62.1 NC_004687.1 + 66680 0.72 0.349094
Target:  5'- cCGGGGcucgauccuggUCGGCGGCGGCaucuauuccGGCG-GCGCg -3'
miRNA:   3'- -GCCCC-----------AGUCGCCGUCGc--------CUGCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.