miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19750 5' -59.8 NC_004687.1 + 22246 0.66 0.758816
Target:  5'- cCUCGGGGUcGagCAGGCuguGCUUGCCGa- -3'
miRNA:   3'- -GAGUCCCA-CggGUCUG---CGAACGGCcu -5'
19750 5' -59.8 NC_004687.1 + 86875 0.66 0.758816
Target:  5'- aUCAGGGUGCUCAcuACGg-UGUCGGc -3'
miRNA:   3'- gAGUCCCACGGGUc-UGCgaACGGCCu -5'
19750 5' -59.8 NC_004687.1 + 111132 0.66 0.749433
Target:  5'- uUCGGGGccGCaCCcGGCGCa-GCCGGGg -3'
miRNA:   3'- gAGUCCCa-CG-GGuCUGCGaaCGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 47658 0.66 0.739953
Target:  5'- -cCAGGGUgugguagaGCCCAGACccgGCggUGUCGGc -3'
miRNA:   3'- gaGUCCCA--------CGGGUCUG---CGa-ACGGCCu -5'
19750 5' -59.8 NC_004687.1 + 139680 0.66 0.739953
Target:  5'- -gCGGGG-GUCCAGGCGg--GCUGGGc -3'
miRNA:   3'- gaGUCCCaCGGGUCUGCgaaCGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 48234 0.66 0.739953
Target:  5'- -gCGGGccacGUGgCCGGACGCcggGCCGGu -3'
miRNA:   3'- gaGUCC----CACgGGUCUGCGaa-CGGCCu -5'
19750 5' -59.8 NC_004687.1 + 139161 0.66 0.730382
Target:  5'- -cCGGGGcGCUguGACGaugcgagGCCGGAa -3'
miRNA:   3'- gaGUCCCaCGGguCUGCgaa----CGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 41193 0.66 0.730382
Target:  5'- -aCuGGGUGgCCAGGCcagaGCccUGCCGGGu -3'
miRNA:   3'- gaGuCCCACgGGUCUG----CGa-ACGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 124577 0.66 0.730382
Target:  5'- -cCGGGGUGCCCu--CGUUgGCCuGGGc -3'
miRNA:   3'- gaGUCCCACGGGucuGCGAaCGG-CCU- -5'
19750 5' -59.8 NC_004687.1 + 86166 0.66 0.71976
Target:  5'- uCUCGGGcaccccgGUGCUU-GACGCccUGCCGGAc -3'
miRNA:   3'- -GAGUCC-------CACGGGuCUGCGa-ACGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 19617 0.67 0.711005
Target:  5'- -gCGGcGG-GCCUGGACGUccuggGCCGGAa -3'
miRNA:   3'- gaGUC-CCaCGGGUCUGCGaa---CGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 104723 0.67 0.702198
Target:  5'- aUCGGGccgaucaucgacugGCCCAGGCGCUggaUGCCGc- -3'
miRNA:   3'- gAGUCCca------------CGGGUCUGCGA---ACGGCcu -5'
19750 5' -59.8 NC_004687.1 + 5776 0.67 0.681481
Target:  5'- aUCAGauUGCCCuugcgaugguGACGCUUGCCGa- -3'
miRNA:   3'- gAGUCccACGGGu---------CUGCGAACGGCcu -5'
19750 5' -59.8 NC_004687.1 + 10489 0.67 0.67155
Target:  5'- -cCAGGGaGCCCAggauggcgauGAUGUUcGCCGGGa -3'
miRNA:   3'- gaGUCCCaCGGGU----------CUGCGAaCGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 48183 0.68 0.651606
Target:  5'- gUCGGGGcGCuCCAGACugucgaugaGCUUGCgGGc -3'
miRNA:   3'- gAGUCCCaCG-GGUCUG---------CGAACGgCCu -5'
19750 5' -59.8 NC_004687.1 + 65474 0.68 0.621596
Target:  5'- -gCAGGaagcUGCCCgAGGCGCcgaGCCGGAu -3'
miRNA:   3'- gaGUCCc---ACGGG-UCUGCGaa-CGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 16898 0.68 0.611599
Target:  5'- gCUCGGuguuGUGCcaCCAGAcCGuCUUGCCGGAc -3'
miRNA:   3'- -GAGUCc---CACG--GGUCU-GC-GAACGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 88325 0.69 0.591655
Target:  5'- cCUCGGGGU-CCCAGcCGCgaUGCCaGGu -3'
miRNA:   3'- -GAGUCCCAcGGGUCuGCGa-ACGG-CCu -5'
19750 5' -59.8 NC_004687.1 + 78316 0.69 0.588672
Target:  5'- -cCAGGuGUGCagCAGGCGCUUGagggugcagcuggcCCGGAa -3'
miRNA:   3'- gaGUCC-CACGg-GUCUGCGAAC--------------GGCCU- -5'
19750 5' -59.8 NC_004687.1 + 100295 0.69 0.552154
Target:  5'- uCUCAGGGUcgcGCUCGGGCGCgucgcgGCUGa- -3'
miRNA:   3'- -GAGUCCCA---CGGGUCUGCGaa----CGGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.