miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19752 5' -51.3 NC_004687.1 + 45005 0.66 0.990297
Target:  5'- cUUCgCGGGCGAcACGAUCaacaUCggCAc -3'
miRNA:   3'- aAAGgGUCCGCUuUGCUAGg---AGaaGU- -5'
19752 5' -51.3 NC_004687.1 + 140003 0.66 0.98892
Target:  5'- aUUCCCuGGCGGAuuccagcagcucGCGAaCCUCg--- -3'
miRNA:   3'- aAAGGGuCCGCUU------------UGCUaGGAGaagu -5'
19752 5' -51.3 NC_004687.1 + 58030 0.66 0.98892
Target:  5'- -gUCCCcGGCGggGCcaguGAUCUUCagCAu -3'
miRNA:   3'- aaAGGGuCCGCuuUG----CUAGGAGaaGU- -5'
19752 5' -51.3 NC_004687.1 + 106541 0.66 0.98892
Target:  5'- -cUCCuCGGGCGGcguggucgaGAUGAaggCCUCUUCc -3'
miRNA:   3'- aaAGG-GUCCGCU---------UUGCUa--GGAGAAGu -5'
19752 5' -51.3 NC_004687.1 + 9231 0.66 0.987396
Target:  5'- -gUCCCGGGCugcGAGCGcAUCCgcuggggCUUCu -3'
miRNA:   3'- aaAGGGUCCGc--UUUGC-UAGGa------GAAGu -5'
19752 5' -51.3 NC_004687.1 + 93354 0.66 0.983869
Target:  5'- ---gCCAGGCGccgGAACGAcgCCUCgcgUCGa -3'
miRNA:   3'- aaagGGUCCGC---UUUGCUa-GGAGa--AGU- -5'
19752 5' -51.3 NC_004687.1 + 117467 0.67 0.981847
Target:  5'- -gUCCUGGGCGGcguugAGCGA--CUCUUCGg -3'
miRNA:   3'- aaAGGGUCCGCU-----UUGCUagGAGAAGU- -5'
19752 5' -51.3 NC_004687.1 + 101490 0.67 0.981847
Target:  5'- -cUCCaGGGCG--GCGAUCCUCg--- -3'
miRNA:   3'- aaAGGgUCCGCuuUGCUAGGAGaagu -5'
19752 5' -51.3 NC_004687.1 + 98061 0.67 0.981847
Target:  5'- --cCCCGGagaacucgucacGCGGAACGAUCUUCU-CGg -3'
miRNA:   3'- aaaGGGUC------------CGCUUUGCUAGGAGAaGU- -5'
19752 5' -51.3 NC_004687.1 + 138079 0.67 0.97964
Target:  5'- -aUCCgCAGGUc--GCGGUCCUCaUCAc -3'
miRNA:   3'- aaAGG-GUCCGcuuUGCUAGGAGaAGU- -5'
19752 5' -51.3 NC_004687.1 + 120353 0.67 0.97894
Target:  5'- --aUCCAGGcCGAcgccaaguucaccgAGCGGUCCggCUUCAg -3'
miRNA:   3'- aaaGGGUCC-GCU--------------UUGCUAGGa-GAAGU- -5'
19752 5' -51.3 NC_004687.1 + 129618 0.67 0.977239
Target:  5'- --cCCCGGGCGAguAACGucCCUCUa-- -3'
miRNA:   3'- aaaGGGUCCGCU--UUGCuaGGAGAagu -5'
19752 5' -51.3 NC_004687.1 + 137818 0.67 0.975703
Target:  5'- --gCCCGGGCGAAcucggucagggcccgGCGggCCUCgaCGa -3'
miRNA:   3'- aaaGGGUCCGCUU---------------UGCuaGGAGaaGU- -5'
19752 5' -51.3 NC_004687.1 + 69248 0.67 0.974637
Target:  5'- aUUgCCAggucGGCGGuguaGGUCCUCUUCGa -3'
miRNA:   3'- aAAgGGU----CCGCUuug-CUAGGAGAAGU- -5'
19752 5' -51.3 NC_004687.1 + 139478 0.68 0.962053
Target:  5'- --aCCCAGGUGccguCGAUCUUCUcCAg -3'
miRNA:   3'- aaaGGGUCCGCuuu-GCUAGGAGAaGU- -5'
19752 5' -51.3 NC_004687.1 + 92619 0.68 0.95436
Target:  5'- --cCCCcGGCGGGAaGAUCgCUCUUCu -3'
miRNA:   3'- aaaGGGuCCGCUUUgCUAG-GAGAAGu -5'
19752 5' -51.3 NC_004687.1 + 84920 0.69 0.940955
Target:  5'- --cCCCGGGCccaGAcGCGGUCCUCa--- -3'
miRNA:   3'- aaaGGGUCCG---CUuUGCUAGGAGaagu -5'
19752 5' -51.3 NC_004687.1 + 92734 0.69 0.935975
Target:  5'- --gCCCAGGCGc-GCGGUCgUCUaCAg -3'
miRNA:   3'- aaaGGGUCCGCuuUGCUAGgAGAaGU- -5'
19752 5' -51.3 NC_004687.1 + 54935 0.7 0.913456
Target:  5'- -aUCCUguaAGGCGggGCGGgaccUCCUCUa-- -3'
miRNA:   3'- aaAGGG---UCCGCuuUGCU----AGGAGAagu -5'
19752 5' -51.3 NC_004687.1 + 29721 0.7 0.913456
Target:  5'- -cUCCCAgGGCGccaccuCGAUCgUCUUCGg -3'
miRNA:   3'- aaAGGGU-CCGCuuu---GCUAGgAGAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.