miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19753 3' -62.1 NC_004687.1 + 104682 0.72 0.334504
Target:  5'- aUCGCcuauGCCUCGGCGCuGACCGAc -3'
miRNA:   3'- gGGCGcuguCGGAGCCGCG-CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 90865 0.72 0.341743
Target:  5'- gCCGCG-CAGCUgggUGGCccagGCGACCGAg -3'
miRNA:   3'- gGGCGCuGUCGGa--GCCG----CGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 130497 0.72 0.341743
Target:  5'- gCCCGgauugggcCGAUAGCCguaggCGGUGuCGACCGAg -3'
miRNA:   3'- -GGGC--------GCUGUCGGa----GCCGC-GCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 153363 0.71 0.37492
Target:  5'- aCCGaCGGCAGCCUgGGCcuggacgacucgaccGgGACCGAc -3'
miRNA:   3'- gGGC-GCUGUCGGAgCCG---------------CgCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 150740 0.71 0.37492
Target:  5'- cUCgGCGGCAGCCuugcgcgcggaucgcUCGGCGCG-CUGGUu -3'
miRNA:   3'- -GGgCGCUGUCGG---------------AGCCGCGCuGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 135194 0.71 0.387514
Target:  5'- --aGCGGCAGCggacgugcgcgCUCGGCGCGAUCGc- -3'
miRNA:   3'- gggCGCUGUCG-----------GAGCCGCGCUGGCua -5'
19753 3' -62.1 NC_004687.1 + 31279 0.71 0.395524
Target:  5'- aCCGCG-CGGCCaUCGcGCGCGAgCUGGg -3'
miRNA:   3'- gGGCGCuGUCGG-AGC-CGCGCU-GGCUa -5'
19753 3' -62.1 NC_004687.1 + 3488 0.71 0.395524
Target:  5'- aCCCGCuGCGGCCUUGGCcGUgagGugCGAg -3'
miRNA:   3'- -GGGCGcUGUCGGAGCCG-CG---CugGCUa -5'
19753 3' -62.1 NC_004687.1 + 66124 0.71 0.403642
Target:  5'- gCCCGCagugGACGGCC-CaGCGCGGCCu-- -3'
miRNA:   3'- -GGGCG----CUGUCGGaGcCGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 136327 0.71 0.403642
Target:  5'- gCCGCGAUGuCCUCGGCcacCGACUGAUc -3'
miRNA:   3'- gGGCGCUGUcGGAGCCGc--GCUGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 150630 0.7 0.420187
Target:  5'- gCCCGUGACGGCCcgguugUUGGCGUugucGACCuGAc -3'
miRNA:   3'- -GGGCGCUGUCGG------AGCCGCG----CUGG-CUa -5'
19753 3' -62.1 NC_004687.1 + 80590 0.7 0.428613
Target:  5'- cCCUG-GACGGCCUUGGUGaGACCGc- -3'
miRNA:   3'- -GGGCgCUGUCGGAGCCGCgCUGGCua -5'
19753 3' -62.1 NC_004687.1 + 120304 0.7 0.428613
Target:  5'- cCCCgGCGACGGCaccgacCGGCGCcaccaccacgaGACCGAc -3'
miRNA:   3'- -GGG-CGCUGUCGga----GCCGCG-----------CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 85417 0.7 0.428613
Target:  5'- gUgGcCGACGGCaC-CGGCGUGACCGAUc -3'
miRNA:   3'- gGgC-GCUGUCG-GaGCCGCGCUGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 6125 0.7 0.428613
Target:  5'- cUCCGCGuuGGCCUgGGCuGUGGCCa-- -3'
miRNA:   3'- -GGGCGCugUCGGAgCCG-CGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 131190 0.7 0.428613
Target:  5'- gUCCaCGACAGCUcgUCGGCGaCGACCu-- -3'
miRNA:   3'- -GGGcGCUGUCGG--AGCCGC-GCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 8181 0.7 0.437137
Target:  5'- gCCCGCGcGCGGCCU--GUGCGGCCa-- -3'
miRNA:   3'- -GGGCGC-UGUCGGAgcCGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 134868 0.7 0.445758
Target:  5'- uCCgGCGGCAGuuCCUCGGCGagaaACCGGc -3'
miRNA:   3'- -GGgCGCUGUC--GGAGCCGCgc--UGGCUa -5'
19753 3' -62.1 NC_004687.1 + 14261 0.7 0.451849
Target:  5'- -aCGCGACGGCuggcuggugcugcgCgagCGGCGCGGCUGGa -3'
miRNA:   3'- ggGCGCUGUCG--------------Ga--GCCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 18082 0.7 0.454473
Target:  5'- gCCCaCGACAuuGCCgUCGGCGuCGACCa-- -3'
miRNA:   3'- -GGGcGCUGU--CGG-AGCCGC-GCUGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.