miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19753 3' -62.1 NC_004687.1 + 130006 1.07 0.00126
Target:  5'- gCCCGCGACAGCCUCGGCGCGACCGAUg -3'
miRNA:   3'- -GGGCGCUGUCGGAGCCGCGCUGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 64893 0.86 0.037771
Target:  5'- cCCgCGCGugGGCCUCGGCGCGGCgCGGg -3'
miRNA:   3'- -GG-GCGCugUCGGAGCCGCGCUG-GCUa -5'
19753 3' -62.1 NC_004687.1 + 97589 0.8 0.105186
Target:  5'- gCCgCGCGGCAGCCUCGGCcuCGACCuGAc -3'
miRNA:   3'- -GG-GCGCUGUCGGAGCCGc-GCUGG-CUa -5'
19753 3' -62.1 NC_004687.1 + 65516 0.76 0.193925
Target:  5'- aCCCGCGACGGCCaCGaGCGCG-UCGGc -3'
miRNA:   3'- -GGGCGCUGUCGGaGC-CGCGCuGGCUa -5'
19753 3' -62.1 NC_004687.1 + 114983 0.76 0.198578
Target:  5'- -aCGCGGCAGCa-CGGCGCGACCu-- -3'
miRNA:   3'- ggGCGCUGUCGgaGCCGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 135186 0.76 0.198578
Target:  5'- -aCGuCGuCGGCCUCgGGCGCGACCGGc -3'
miRNA:   3'- ggGC-GCuGUCGGAG-CCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 35048 0.75 0.233936
Target:  5'- gCCC-CGGCAGCCgcaGGCGCGGCgGGc -3'
miRNA:   3'- -GGGcGCUGUCGGag-CCGCGCUGgCUa -5'
19753 3' -62.1 NC_004687.1 + 127365 0.74 0.239399
Target:  5'- gCuuGCGcugaGCGGCCUCGGCcucgaCGACCGAUg -3'
miRNA:   3'- -GggCGC----UGUCGGAGCCGc----GCUGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 55624 0.74 0.268325
Target:  5'- gCCGCGACGcGCC-CGaGCGCGACCc-- -3'
miRNA:   3'- gGGCGCUGU-CGGaGC-CGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 131540 0.73 0.273822
Target:  5'- gCCCGCGuugaucaGCGGCagCUCGGCGCcggucuGACCGGUg -3'
miRNA:   3'- -GGGCGC-------UGUCG--GAGCCGCG------CUGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 10590 0.73 0.280663
Target:  5'- gCCGCGACcGCCUUGGCGaucuCGGCgGGUg -3'
miRNA:   3'- gGGCGCUGuCGGAGCCGC----GCUGgCUA- -5'
19753 3' -62.1 NC_004687.1 + 9860 0.73 0.280663
Target:  5'- aCCUgGCGcGCGGUCUCGGCGUcggGACCGAc -3'
miRNA:   3'- -GGG-CGC-UGUCGGAGCCGCG---CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 141441 0.73 0.286999
Target:  5'- gUCGCGcGCGGCCUCGG-GCuGGCCGAc -3'
miRNA:   3'- gGGCGC-UGUCGGAGCCgCG-CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 27834 0.73 0.30668
Target:  5'- gCCGgaGGCGGggUCGGCGCGACCGGg -3'
miRNA:   3'- gGGCg-CUGUCggAGCCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 115868 0.72 0.313467
Target:  5'- uCCgGCGGCucuCCUCGGCGCcACCGGc -3'
miRNA:   3'- -GGgCGCUGuc-GGAGCCGCGcUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 107573 0.72 0.320366
Target:  5'- cCCUGCGGCAuGUggaugaagUCGGCGUGACCGAc -3'
miRNA:   3'- -GGGCGCUGU-CGg-------AGCCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 19498 0.72 0.327379
Target:  5'- uCCUG-GAgAGCCaCGGCGCGAUCGAc -3'
miRNA:   3'- -GGGCgCUgUCGGaGCCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 22236 0.72 0.332355
Target:  5'- gUUGCGGCAGCCUCGGgGuCGagcaggcugugcuuGCCGAUg -3'
miRNA:   3'- gGGCGCUGUCGGAGCCgC-GC--------------UGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 140346 0.72 0.333787
Target:  5'- gCCUGUGGCAggucGCCUCGggcucguggucgcGCGUGACCGAc -3'
miRNA:   3'- -GGGCGCUGU----CGGAGC-------------CGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 140749 0.72 0.334504
Target:  5'- uUCCGUGACaaGGCCUCGG-GUGACgCGGUc -3'
miRNA:   3'- -GGGCGCUG--UCGGAGCCgCGCUG-GCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.