miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19753 3' -62.1 NC_004687.1 + 131452 0.69 0.481155
Target:  5'- aCCUGCGGgcgaucaguaacCuGCCguUCGGCGgGACCGAc -3'
miRNA:   3'- -GGGCGCU------------GuCGG--AGCCGCgCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 31279 0.71 0.395524
Target:  5'- aCCGCG-CGGCCaUCGcGCGCGAgCUGGg -3'
miRNA:   3'- gGGCGCuGUCGG-AGC-CGCGCU-GGCUa -5'
19753 3' -62.1 NC_004687.1 + 66124 0.71 0.403642
Target:  5'- gCCCGCagugGACGGCC-CaGCGCGGCCu-- -3'
miRNA:   3'- -GGGCG----CUGUCGGaGcCGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 120304 0.7 0.428613
Target:  5'- cCCCgGCGACGGCaccgacCGGCGCcaccaccacgaGACCGAc -3'
miRNA:   3'- -GGG-CGCUGUCGga----GCCGCG-----------CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 8181 0.7 0.437137
Target:  5'- gCCCGCGcGCGGCCU--GUGCGGCCa-- -3'
miRNA:   3'- -GGGCGC-UGUCGGAgcCGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 14261 0.7 0.451849
Target:  5'- -aCGCGACGGCuggcuggugcugcgCgagCGGCGCGGCUGGa -3'
miRNA:   3'- ggGCGCUGUCG--------------Ga--GCCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 45123 0.69 0.463279
Target:  5'- uUCGCGggcACgAGCaccagCGGCGCGACCGAc -3'
miRNA:   3'- gGGCGC---UG-UCGga---GCCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 71388 0.69 0.471281
Target:  5'- aUCGUGACGGCCauggcugUCGGCGCGGgCa-- -3'
miRNA:   3'- gGGCGCUGUCGG-------AGCCGCGCUgGcua -5'
19753 3' -62.1 NC_004687.1 + 123677 0.69 0.472174
Target:  5'- -gCGCGAgAGCCgacgCGGgGUGACCGc- -3'
miRNA:   3'- ggGCGCUgUCGGa---GCCgCGCUGGCua -5'
19753 3' -62.1 NC_004687.1 + 153363 0.71 0.37492
Target:  5'- aCCGaCGGCAGCCUgGGCcuggacgacucgaccGgGACCGAc -3'
miRNA:   3'- gGGC-GCUGUCGGAgCCG---------------CgCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 104682 0.72 0.334504
Target:  5'- aUCGCcuauGCCUCGGCGCuGACCGAc -3'
miRNA:   3'- gGGCGcuguCGGAGCCGCG-CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 140749 0.72 0.334504
Target:  5'- uUCCGUGACaaGGCCUCGG-GUGACgCGGUc -3'
miRNA:   3'- -GGGCGCUG--UCGGAGCCgCGCUG-GCUA- -5'
19753 3' -62.1 NC_004687.1 + 65516 0.76 0.193925
Target:  5'- aCCCGCGACGGCCaCGaGCGCG-UCGGc -3'
miRNA:   3'- -GGGCGCUGUCGGaGC-CGCGCuGGCUa -5'
19753 3' -62.1 NC_004687.1 + 114983 0.76 0.198578
Target:  5'- -aCGCGGCAGCa-CGGCGCGACCu-- -3'
miRNA:   3'- ggGCGCUGUCGgaGCCGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 135186 0.76 0.198578
Target:  5'- -aCGuCGuCGGCCUCgGGCGCGACCGGc -3'
miRNA:   3'- ggGC-GCuGUCGGAG-CCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 35048 0.75 0.233936
Target:  5'- gCCC-CGGCAGCCgcaGGCGCGGCgGGc -3'
miRNA:   3'- -GGGcGCUGUCGGag-CCGCGCUGgCUa -5'
19753 3' -62.1 NC_004687.1 + 55624 0.74 0.268325
Target:  5'- gCCGCGACGcGCC-CGaGCGCGACCc-- -3'
miRNA:   3'- gGGCGCUGU-CGGaGC-CGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 141441 0.73 0.286999
Target:  5'- gUCGCGcGCGGCCUCGG-GCuGGCCGAc -3'
miRNA:   3'- gGGCGC-UGUCGGAGCCgCG-CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 19498 0.72 0.327379
Target:  5'- uCCUG-GAgAGCCaCGGCGCGAUCGAc -3'
miRNA:   3'- -GGGCgCUgUCGGaGCCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 140346 0.72 0.333787
Target:  5'- gCCUGUGGCAggucGCCUCGggcucguggucgcGCGUGACCGAc -3'
miRNA:   3'- -GGGCGCUGU----CGGAGC-------------CGCGCUGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.