miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19753 3' -62.1 NC_004687.1 + 3253 0.66 0.691326
Target:  5'- aCUGCGGCAGCUU-GGCGUgcacGGCCa-- -3'
miRNA:   3'- gGGCGCUGUCGGAgCCGCG----CUGGcua -5'
19753 3' -62.1 NC_004687.1 + 3488 0.71 0.395524
Target:  5'- aCCCGCuGCGGCCUUGGCcGUgagGugCGAg -3'
miRNA:   3'- -GGGCGcUGUCGGAGCCG-CG---CugGCUa -5'
19753 3' -62.1 NC_004687.1 + 6125 0.7 0.428613
Target:  5'- cUCCGCGuuGGCCUgGGCuGUGGCCa-- -3'
miRNA:   3'- -GGGCGCugUCGGAgCCG-CGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 6129 0.67 0.574827
Target:  5'- gCCGCGuccguACGGCCaCGGCGCGcauGCCa-- -3'
miRNA:   3'- gGGCGC-----UGUCGGaGCCGCGC---UGGcua -5'
19753 3' -62.1 NC_004687.1 + 6990 0.66 0.681689
Target:  5'- gCCCGCGugucCGGCCcggCGGCGCc-CCGu- -3'
miRNA:   3'- -GGGCGCu---GUCGGa--GCCGCGcuGGCua -5'
19753 3' -62.1 NC_004687.1 + 7082 0.67 0.603878
Target:  5'- gCCCGCu-CGGCCUUGcgcuccucacGCGCGGCCuGGUc -3'
miRNA:   3'- -GGGCGcuGUCGGAGC----------CGCGCUGG-CUA- -5'
19753 3' -62.1 NC_004687.1 + 8181 0.7 0.437137
Target:  5'- gCCCGCGcGCGGCCU--GUGCGGCCa-- -3'
miRNA:   3'- -GGGCGC-UGUCGGAgcCGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 9295 0.67 0.613607
Target:  5'- gCCCGCGcCAGCCcgaCGGCucGUGGCUGc- -3'
miRNA:   3'- -GGGCGCuGUCGGa--GCCG--CGCUGGCua -5'
19753 3' -62.1 NC_004687.1 + 9860 0.73 0.280663
Target:  5'- aCCUgGCGcGCGGUCUCGGCGUcggGACCGAc -3'
miRNA:   3'- -GGG-CGC-UGUCGGAGCCGCG---CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 10590 0.73 0.280663
Target:  5'- gCCGCGACcGCCUUGGCGaucuCGGCgGGUg -3'
miRNA:   3'- gGGCGCUGuCGGAGCCGC----GCUGgCUA- -5'
19753 3' -62.1 NC_004687.1 + 11878 0.66 0.691326
Target:  5'- aCCCuCGACgacgccaaGGCCUgGGCGCaGACCc-- -3'
miRNA:   3'- -GGGcGCUG--------UCGGAgCCGCG-CUGGcua -5'
19753 3' -62.1 NC_004687.1 + 11992 0.66 0.691326
Target:  5'- aCCGCGAacgucgccCCUCGGCGaUGauGCCGAUg -3'
miRNA:   3'- gGGCGCUguc-----GGAGCCGC-GC--UGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 14261 0.7 0.451849
Target:  5'- -aCGCGACGGCuggcuggugcugcgCgagCGGCGCGGCUGGa -3'
miRNA:   3'- ggGCGCUGUCG--------------Ga--GCCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 15928 0.66 0.690364
Target:  5'- gCCGuUGACGGUUUgcacggugucgucCGGCGCGACCa-- -3'
miRNA:   3'- gGGC-GCUGUCGGA-------------GCCGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 17420 0.69 0.499359
Target:  5'- gCCGCGACauGGCCUCcggcuguccGCGCGGCUGu- -3'
miRNA:   3'- gGGCGCUG--UCGGAGc--------CGCGCUGGCua -5'
19753 3' -62.1 NC_004687.1 + 18082 0.7 0.454473
Target:  5'- gCCCaCGACAuuGCCgUCGGCGuCGACCa-- -3'
miRNA:   3'- -GGGcGCUGU--CGG-AGCCGC-GCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 19498 0.72 0.327379
Target:  5'- uCCUG-GAgAGCCaCGGCGCGAUCGAc -3'
miRNA:   3'- -GGGCgCUgUCGGaGCCGCGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 20373 0.67 0.610687
Target:  5'- aCUGCGGCcagggccagcgguaGGCCaUCGGCGCccaGACCGc- -3'
miRNA:   3'- gGGCGCUG--------------UCGG-AGCCGCG---CUGGCua -5'
19753 3' -62.1 NC_004687.1 + 21550 0.67 0.603878
Target:  5'- uCCCGCccGGCGGUCgUGaGCGCGGCCa-- -3'
miRNA:   3'- -GGGCG--CUGUCGGaGC-CGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 21961 0.67 0.62335
Target:  5'- gUCGuCGACcuCCUCGGUGgGAUCGAUc -3'
miRNA:   3'- gGGC-GCUGucGGAGCCGCgCUGGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.