Results 1 - 20 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19753 | 3' | -62.1 | NC_004687.1 | + | 125380 | 0.66 | 0.672015 |
Target: 5'- gCCCGUG-CAGCg-UGGCcaaguuccGCGACCGGUu -3' miRNA: 3'- -GGGCGCuGUCGgaGCCG--------CGCUGGCUA- -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 133060 | 0.66 | 0.691326 |
Target: 5'- aCUCuuGugGGUCUCGcGCGCG-CCGAa -3' miRNA: 3'- -GGGcgCugUCGGAGC-CGCGCuGGCUa -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 137789 | 0.66 | 0.672015 |
Target: 5'- aCCGUGGuCGuGCUggCGGCGUGGCCGc- -3' miRNA: 3'- gGGCGCU-GU-CGGa-GCCGCGCUGGCua -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 88630 | 0.66 | 0.680723 |
Target: 5'- gCUCuCGuCGGCCUCGGUggccgagGCGAUCGAc -3' miRNA: 3'- -GGGcGCuGUCGGAGCCG-------CGCUGGCUa -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 30258 | 0.66 | 0.681689 |
Target: 5'- aCUC-CGACGGCCUCaacaagcaGGCGCucGACCGc- -3' miRNA: 3'- -GGGcGCUGUCGGAG--------CCGCG--CUGGCua -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 123987 | 0.66 | 0.691326 |
Target: 5'- aCCCGCG-C-GCCcgUCGGUGUGggucagcaGCCGAUg -3' miRNA: 3'- -GGGCGCuGuCGG--AGCCGCGC--------UGGCUA- -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 11878 | 0.66 | 0.691326 |
Target: 5'- aCCCuCGACgacgccaaGGCCUgGGCGCaGACCc-- -3' miRNA: 3'- -GGGcGCUG--------UCGGAgCCGCG-CUGGcua -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 73949 | 0.66 | 0.681689 |
Target: 5'- aCCCgGCGAUccucggcauGGUCggCGGCGCGgugGCCGGa -3' miRNA: 3'- -GGG-CGCUG---------UCGGa-GCCGCGC---UGGCUa -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 31242 | 0.66 | 0.633098 |
Target: 5'- gCCGaCGACAcCCaCGGCGUgcuGACCGAg -3' miRNA: 3'- gGGC-GCUGUcGGaGCCGCG---CUGGCUa -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 11992 | 0.66 | 0.691326 |
Target: 5'- aCCGCGAacgucgccCCUCGGCGaUGauGCCGAUg -3' miRNA: 3'- gGGCGCUguc-----GGAGCCGC-GC--UGGCUA- -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 115556 | 0.66 | 0.672015 |
Target: 5'- aUCGcCGACAGCCggGaGCGCaaGACCGGc -3' miRNA: 3'- gGGC-GCUGUCGGagC-CGCG--CUGGCUa -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 78251 | 0.66 | 0.633098 |
Target: 5'- uCCCGCacGAC-GCCaUUGGCaGCGACCa-- -3' miRNA: 3'- -GGGCG--CUGuCGG-AGCCG-CGCUGGcua -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 78635 | 0.66 | 0.642846 |
Target: 5'- uCCCGaccaccaaCGGCAGucCCUCGGCaGCGGCUGc- -3' miRNA: 3'- -GGGC--------GCUGUC--GGAGCCG-CGCUGGCua -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 61437 | 0.66 | 0.662312 |
Target: 5'- cCCCG-GGCAucuuGuCCgUCGGCGCcGACCGGa -3' miRNA: 3'- -GGGCgCUGU----C-GG-AGCCGCG-CUGGCUa -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 56397 | 0.66 | 0.672015 |
Target: 5'- aUCGuCGGCAGUCgUCGGUGCGGgUGGg -3' miRNA: 3'- gGGC-GCUGUCGG-AGCCGCGCUgGCUa -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 109965 | 0.66 | 0.672015 |
Target: 5'- aCCUgGCGGCAGguaUCGGgGCGACCu-- -3' miRNA: 3'- -GGG-CGCUGUCgg-AGCCgCGCUGGcua -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 49011 | 0.66 | 0.642846 |
Target: 5'- aCCCGCGcCcGCCcCGGCGCcACCc-- -3' miRNA: 3'- -GGGCGCuGuCGGaGCCGCGcUGGcua -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 106988 | 0.66 | 0.642846 |
Target: 5'- gCCCGCGA-GGCCga-GCGCGAuCUGGUg -3' miRNA: 3'- -GGGCGCUgUCGGagcCGCGCU-GGCUA- -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 69664 | 0.66 | 0.681689 |
Target: 5'- aCCgGCGGCAGCUUCaagcuGuCGCuGGCCGGa -3' miRNA: 3'- -GGgCGCUGUCGGAGc----C-GCG-CUGGCUa -5' |
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19753 | 3' | -62.1 | NC_004687.1 | + | 89409 | 0.66 | 0.642846 |
Target: 5'- gCUGCG-CGG-CUCGGCGCgGugCGAc -3' miRNA: 3'- gGGCGCuGUCgGAGCCGCG-CugGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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