miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20406 3' -62.7 NC_004688.1 + 104977 0.68 0.391046
Target:  5'- aGCC-GAUgGGUacgCCCAUcCCCCGGCg -3'
miRNA:   3'- gUGGuCUAgCCGg--GGGUAcGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 104123 0.66 0.525518
Target:  5'- gGCCAGAcugcaaGGCUgCauugGUGCCCgCGGCg -3'
miRNA:   3'- gUGGUCUag----CCGGgGg---UACGGG-GCCG- -5'
20406 3' -62.7 NC_004688.1 + 100562 0.66 0.515942
Target:  5'- uUugCGGcgauacugCGGCCCCCc-GCgCCGGCc -3'
miRNA:   3'- -GugGUCua------GCCGGGGGuaCGgGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 100034 0.7 0.321877
Target:  5'- -uCCGGGUgGuuGCCCCCAU-CCCCGGg -3'
miRNA:   3'- guGGUCUAgC--CGGGGGUAcGGGGCCg -5'
20406 3' -62.7 NC_004688.1 + 96829 0.77 0.116711
Target:  5'- aCACCAGGUCGGCguucugCCCGUGgUUCGGCg -3'
miRNA:   3'- -GUGGUCUAGCCGg-----GGGUACgGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 95505 0.69 0.351448
Target:  5'- cCGCCGGAgUGGCgcaacCCCCAgGCCCCgccauuccGGCg -3'
miRNA:   3'- -GUGGUCUaGCCG-----GGGGUaCGGGG--------CCG- -5'
20406 3' -62.7 NC_004688.1 + 92968 0.68 0.433443
Target:  5'- aCACCAG--CGGCUCUacgGCCgCGGCg -3'
miRNA:   3'- -GUGGUCuaGCCGGGGguaCGGgGCCG- -5'
20406 3' -62.7 NC_004688.1 + 92235 0.67 0.451134
Target:  5'- gGCCuccuuAGcgCGGCgaacgcaguCCCaCGUGCCUCGGCu -3'
miRNA:   3'- gUGG-----UCuaGCCG---------GGG-GUACGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 89329 0.68 0.399307
Target:  5'- --gCAG-UCGGCCaggaCCuugAUGUCCCGGCg -3'
miRNA:   3'- gugGUCuAGCCGGg---GG---UACGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 88777 0.73 0.212465
Target:  5'- cCACCAGGUUGcucuCCCCCGUGCacagggcaugauggaCCGGCc -3'
miRNA:   3'- -GUGGUCUAGCc---GGGGGUACGg--------------GGCCG- -5'
20406 3' -62.7 NC_004688.1 + 87392 0.66 0.497008
Target:  5'- gACCA--UCGGUgUUCAUGCCCaCGGUc -3'
miRNA:   3'- gUGGUcuAGCCGgGGGUACGGG-GCCG- -5'
20406 3' -62.7 NC_004688.1 + 87259 0.71 0.25623
Target:  5'- cCGCCGGGcuccaGGCCCCCccGCCCacgccagGGCg -3'
miRNA:   3'- -GUGGUCUag---CCGGGGGuaCGGGg------CCG- -5'
20406 3' -62.7 NC_004688.1 + 79474 0.66 0.515942
Target:  5'- uCGCCGcGGUCucggcugauaGGCCaCCC--GCUCCGGCa -3'
miRNA:   3'- -GUGGU-CUAG----------CCGG-GGGuaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 78750 0.66 0.497008
Target:  5'- -uCCGaGUCGGUgCCCCAgaucgGCUUCGGCg -3'
miRNA:   3'- guGGUcUAGCCG-GGGGUa----CGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 75886 0.66 0.53516
Target:  5'- gUACCAGAgggcggCGGgCCCCAgcuucgcggGCUUgGGCc -3'
miRNA:   3'- -GUGGUCUa-----GCCgGGGGUa--------CGGGgCCG- -5'
20406 3' -62.7 NC_004688.1 + 74699 0.67 0.460127
Target:  5'- gACCAGGcgggugccgUCGGCgCCgAUGCCgauaUCGGCc -3'
miRNA:   3'- gUGGUCU---------AGCCGgGGgUACGG----GGCCG- -5'
20406 3' -62.7 NC_004688.1 + 69061 0.67 0.460127
Target:  5'- -uCCAuGAU-GGCCgcauaaCCC-UGCCCCGGCu -3'
miRNA:   3'- guGGU-CUAgCCGG------GGGuACGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 68233 0.66 0.53516
Target:  5'- gGCCAGAUC-GCUCgCCA-GCgagUCCGGCa -3'
miRNA:   3'- gUGGUCUAGcCGGG-GGUaCG---GGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 66238 0.67 0.442238
Target:  5'- gACCGGGUCGaaaaugaCCUCA-GCCCCGGa -3'
miRNA:   3'- gUGGUCUAGCcg-----GGGGUaCGGGGCCg -5'
20406 3' -62.7 NC_004688.1 + 65701 0.71 0.274693
Target:  5'- aCGCCGGGgucgccCGGCgCCUAgcuugcgGCCUCGGCg -3'
miRNA:   3'- -GUGGUCUa-----GCCGgGGGUa------CGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.