miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20406 3' -62.7 NC_004688.1 + 26051 0.67 0.460127
Target:  5'- gCACCGGGggcaCGGCUCCgGggagGCCCgugGGCa -3'
miRNA:   3'- -GUGGUCUa---GCCGGGGgUa---CGGGg--CCG- -5'
20406 3' -62.7 NC_004688.1 + 38974 0.67 0.460127
Target:  5'- gCGCCGGGgauaacgaCGGCCCCgGcaaCCCCGGa -3'
miRNA:   3'- -GUGGUCUa-------GCCGGGGgUac-GGGGCCg -5'
20406 3' -62.7 NC_004688.1 + 74699 0.67 0.460127
Target:  5'- gACCAGGcgggugccgUCGGCgCCgAUGCCgauaUCGGCc -3'
miRNA:   3'- gUGGUCU---------AGCCGgGGgUACGG----GGCCG- -5'
20406 3' -62.7 NC_004688.1 + 69061 0.67 0.460127
Target:  5'- -uCCAuGAU-GGCCgcauaaCCC-UGCCCCGGCu -3'
miRNA:   3'- guGGU-CUAgCCGG------GGGuACGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 48914 0.67 0.456519
Target:  5'- gGCUGGAgcugguggguucgCGGUCCCUGUGCCgCGGg -3'
miRNA:   3'- gUGGUCUa------------GCCGGGGGUACGGgGCCg -5'
20406 3' -62.7 NC_004688.1 + 92235 0.67 0.451134
Target:  5'- gGCCuccuuAGcgCGGCgaacgcaguCCCaCGUGCCUCGGCu -3'
miRNA:   3'- gUGG-----UCuaGCCG---------GGG-GUACGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 66238 0.67 0.442238
Target:  5'- gACCGGGUCGaaaaugaCCUCA-GCCCCGGa -3'
miRNA:   3'- gUGGUCUAGCcg-----GGGGUaCGGGGCCg -5'
20406 3' -62.7 NC_004688.1 + 49971 0.67 0.442238
Target:  5'- gCugCGGGUCGGCgaaaUCAaGCCCUGGUa -3'
miRNA:   3'- -GugGUCUAGCCGgg--GGUaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 92968 0.68 0.433443
Target:  5'- aCACCAG--CGGCUCUacgGCCgCGGCg -3'
miRNA:   3'- -GUGGUCuaGCCGGGGguaCGGgGCCG- -5'
20406 3' -62.7 NC_004688.1 + 6150 0.68 0.416161
Target:  5'- gCGCU-GGUCGGCCgCC--GUCCCGGUg -3'
miRNA:   3'- -GUGGuCUAGCCGGgGGuaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 43874 0.68 0.407679
Target:  5'- gCGCgAGAUCcGCCCCgAaGCCgggaCCGGCa -3'
miRNA:   3'- -GUGgUCUAGcCGGGGgUaCGG----GGCCG- -5'
20406 3' -62.7 NC_004688.1 + 48197 0.68 0.407679
Target:  5'- uGCUGGAU-GGCCgCCAcccGCCCgGGCa -3'
miRNA:   3'- gUGGUCUAgCCGGgGGUa--CGGGgCCG- -5'
20406 3' -62.7 NC_004688.1 + 89329 0.68 0.399307
Target:  5'- --gCAG-UCGGCCaggaCCuugAUGUCCCGGCg -3'
miRNA:   3'- gugGUCuAGCCGGg---GG---UACGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 104977 0.68 0.391046
Target:  5'- aGCC-GAUgGGUacgCCCAUcCCCCGGCg -3'
miRNA:   3'- gUGGuCUAgCCGg--GGGUAcGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 53653 0.69 0.366941
Target:  5'- cCugCGGGUCcGCCCag--GCUCCGGCa -3'
miRNA:   3'- -GugGUCUAGcCGGGgguaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 95505 0.69 0.351448
Target:  5'- cCGCCGGAgUGGCgcaacCCCCAgGCCCCgccauuccGGCg -3'
miRNA:   3'- -GUGGUCUaGCCG-----GGGGUaCGGGG--------CCG- -5'
20406 3' -62.7 NC_004688.1 + 6695 0.69 0.348406
Target:  5'- gCGCCGccgCGGCCCaCCAggaucucuucgggGCCCCaGGCg -3'
miRNA:   3'- -GUGGUcuaGCCGGG-GGUa------------CGGGG-CCG- -5'
20406 3' -62.7 NC_004688.1 + 280 0.7 0.336426
Target:  5'- -uUCGGGgggCGGCCCC---GCCCCGGUu -3'
miRNA:   3'- guGGUCUa--GCCGGGGguaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 19691 0.7 0.336426
Target:  5'- uCGCCcauuGggCGGaaagauucagaCCCCCggGCCCCGGUg -3'
miRNA:   3'- -GUGGu---CuaGCC-----------GGGGGuaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 26376 0.7 0.321877
Target:  5'- uGCCGGAcCGGCCaucgccgagCCCGcGCCCaUGGCg -3'
miRNA:   3'- gUGGUCUaGCCGG---------GGGUaCGGG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.