Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20407 | 5' | -63.5 | NC_004688.1 | + | 26581 | 0.66 | 0.517002 |
Target: 5'- uUCCGCCaagggCGgGCUugGCCUGagaaagGCCg -3' miRNA: 3'- -AGGCGGg----GCgCGGugUGGGCgaa---CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 26664 | 0.68 | 0.376695 |
Target: 5'- gCCGCCCU--GCUGCugUUGCUUGUCa -3' miRNA: 3'- aGGCGGGGcgCGGUGugGGCGAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 27004 | 0.66 | 0.507559 |
Target: 5'- cUCCGugaCCCCGgGCCACggcGCCaGUccGCCg -3' miRNA: 3'- -AGGC---GGGGCgCGGUG---UGGgCGaaCGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 31108 | 0.68 | 0.368806 |
Target: 5'- gUUGCCCaCGCGCUgcgcgguggGCACCCaCaUGCCg -3' miRNA: 3'- aGGCGGG-GCGCGG---------UGUGGGcGaACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 32155 | 0.67 | 0.461534 |
Target: 5'- uUCUGCCCCGacCGCaGCGCCUuCaacgUGCCa -3' miRNA: 3'- -AGGCGGGGC--GCGgUGUGGGcGa---ACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 33634 | 0.72 | 0.229869 |
Target: 5'- aCCGCCCaCGcCGCCAgCGCCCGg--GUCg -3' miRNA: 3'- aGGCGGG-GC-GCGGU-GUGGGCgaaCGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 33925 | 0.71 | 0.245484 |
Target: 5'- gCCGCCaCCaggaGCGCCAUugCCGCcggacugaaagGCCg -3' miRNA: 3'- aGGCGG-GG----CGCGGUGugGGCGaa---------CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 35825 | 0.66 | 0.511328 |
Target: 5'- aCUGCUCCGCGCgcaagCGCGCCCccagaaucguugucaGCUUGg- -3' miRNA: 3'- aGGCGGGGCGCG-----GUGUGGG---------------CGAACgg -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 36453 | 0.67 | 0.417806 |
Target: 5'- aCCGCUCCGCGCCGgacauuccaACCUGCggGg- -3' miRNA: 3'- aGGCGGGGCGCGGUg--------UGGGCGaaCgg -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 37262 | 0.67 | 0.434998 |
Target: 5'- gUCUGCuCCCGCGCauauccacCACCCGUg-GCUu -3' miRNA: 3'- -AGGCG-GGGCGCGgu------GUGGGCGaaCGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 38689 | 0.69 | 0.353372 |
Target: 5'- cCCGCUCCGcCGCCGC-CgCCGCg-GCg -3' miRNA: 3'- aGGCGGGGC-GCGGUGuG-GGCGaaCGg -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 39064 | 0.67 | 0.434129 |
Target: 5'- gCCGCCuccuccgCCGC-CCGCACCUGCaccGCUc -3' miRNA: 3'- aGGCGG-------GGCGcGGUGUGGGCGaa-CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 39187 | 0.67 | 0.443746 |
Target: 5'- aCCGCCgguuuggucggCgGCGCUGgACCCGUUgGCCc -3' miRNA: 3'- aGGCGG-----------GgCGCGGUgUGGGCGAaCGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 41949 | 0.7 | 0.303014 |
Target: 5'- cCCGCCuuGCggGCCuuguCCCGgUUGCCc -3' miRNA: 3'- aGGCGGggCG--CGGugu-GGGCgAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 42406 | 0.66 | 0.517002 |
Target: 5'- cUCC-UCCCGCGCCcagaagacgGCGCa-GCUUGUCu -3' miRNA: 3'- -AGGcGGGGCGCGG---------UGUGggCGAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 52831 | 0.67 | 0.417806 |
Target: 5'- uUCagGCCCgGCGaCugGCCCaauGCUUGCUg -3' miRNA: 3'- -AGg-CGGGgCGCgGugUGGG---CGAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 53215 | 0.69 | 0.328918 |
Target: 5'- -gCGCCaggugggcuacggaCCGCGgUACGCCCGCaucgGCCg -3' miRNA: 3'- agGCGG--------------GGCGCgGUGUGGGCGaa--CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 53646 | 0.71 | 0.237569 |
Target: 5'- gUCCGCCCaggcuccggcauugaCGuCGCCG-GCCUGCUUGUCg -3' miRNA: 3'- -AGGCGGG---------------GC-GCGGUgUGGGCGAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 55008 | 0.67 | 0.462433 |
Target: 5'- uUCCGCCCCGCcuaGCCAaGCUaacuauuaggcagggGCggGCCa -3' miRNA: 3'- -AGGCGGGGCG---CGGUgUGGg--------------CGaaCGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 55251 | 0.66 | 0.479691 |
Target: 5'- -aUGCaCCGgGCCaggagggucugcGCACCCGCggcacgUGCCg -3' miRNA: 3'- agGCGgGGCgCGG------------UGUGGGCGa-----ACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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