miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20411 3' -53 NC_004688.1 + 34377 0.66 0.958836
Target:  5'- gCGGAccGGugaucugcaacAUCAcucccGGCUGGCCGGuCUCCg -3'
miRNA:   3'- -GCUUuuCC-----------UAGU-----CCGGCCGGUU-GAGG- -5'
20411 3' -53 NC_004688.1 + 73547 0.66 0.958836
Target:  5'- aGGccAGGGGGUCcGGCCaGCCgAGCUUUg -3'
miRNA:   3'- gCU--UUUCCUAGuCCGGcCGG-UUGAGG- -5'
20411 3' -53 NC_004688.1 + 73853 0.66 0.958836
Target:  5'- uCGggGAGGAUCgcauacuuaccGGG--GGCUAAUUCCc -3'
miRNA:   3'- -GCuuUUCCUAG-----------UCCggCCGGUUGAGG- -5'
20411 3' -53 NC_004688.1 + 46210 0.66 0.958836
Target:  5'- uCGAuuGGGAUuacugcagCAGccccaCCGGCCAGCugUCCg -3'
miRNA:   3'- -GCUuuUCCUA--------GUCc----GGCCGGUUG--AGG- -5'
20411 3' -53 NC_004688.1 + 66616 0.66 0.958836
Target:  5'- aGAGAGuGuGUCgGGGUCGGCCAcgaAUUCCu -3'
miRNA:   3'- gCUUUU-CcUAG-UCCGGCCGGU---UGAGG- -5'
20411 3' -53 NC_004688.1 + 29697 0.66 0.954924
Target:  5'- cCGGcuGGGGAUCAcccGGCCG-CCAcaACUUCa -3'
miRNA:   3'- -GCUu-UUCCUAGU---CCGGCcGGU--UGAGG- -5'
20411 3' -53 NC_004688.1 + 102366 0.66 0.954924
Target:  5'- gCGGAGcAGG-UguGGCCGGUCuACUgCg -3'
miRNA:   3'- -GCUUU-UCCuAguCCGGCCGGuUGAgG- -5'
20411 3' -53 NC_004688.1 + 2174 0.66 0.954924
Target:  5'- aGAGAuggccaagugcGGGGUUGGcGCUGGCgAuCUCCg -3'
miRNA:   3'- gCUUU-----------UCCUAGUC-CGGCCGgUuGAGG- -5'
20411 3' -53 NC_004688.1 + 69711 0.66 0.95452
Target:  5'- gGAGuGGGAguUCAccaggguGGCagCGGCCuGCUCCg -3'
miRNA:   3'- gCUUuUCCU--AGU-------CCG--GCCGGuUGAGG- -5'
20411 3' -53 NC_004688.1 + 60474 0.66 0.95452
Target:  5'- uCGAAucccucuGGGGAUUcgGGGUCGGCgAcguaguuccagGCUCCu -3'
miRNA:   3'- -GCUU-------UUCCUAG--UCCGGCCGgU-----------UGAGG- -5'
20411 3' -53 NC_004688.1 + 20864 0.66 0.950768
Target:  5'- gCGAAcagcGGGuaacccugCAGGCCGcGCCAG-UCCg -3'
miRNA:   3'- -GCUUu---UCCua------GUCCGGC-CGGUUgAGG- -5'
20411 3' -53 NC_004688.1 + 41786 0.66 0.950768
Target:  5'- uGggGuccuccGGGAUCGGGCUG-CCGuCUUCg -3'
miRNA:   3'- gCuuU------UCCUAGUCCGGCcGGUuGAGG- -5'
20411 3' -53 NC_004688.1 + 75102 0.66 0.950768
Target:  5'- aCGAAAuGGAaCGGGgUGGCgAccucgcGCUCCg -3'
miRNA:   3'- -GCUUUuCCUaGUCCgGCCGgU------UGAGG- -5'
20411 3' -53 NC_004688.1 + 74550 0.66 0.941707
Target:  5'- uGAAGGGGAuUUGGGCCacauccgucacgGGCC--CUCCu -3'
miRNA:   3'- gCUUUUCCU-AGUCCGG------------CCGGuuGAGG- -5'
20411 3' -53 NC_004688.1 + 3216 0.66 0.941707
Target:  5'- uCGccAAGGAUgcugccgugCAGGuCCGGCCA-CUCa -3'
miRNA:   3'- -GCuuUUCCUA---------GUCC-GGCCGGUuGAGg -5'
20411 3' -53 NC_004688.1 + 12903 0.66 0.941707
Target:  5'- cCGAGAAGucUC-GGCCGGgCAgguGCUCUu -3'
miRNA:   3'- -GCUUUUCcuAGuCCGGCCgGU---UGAGG- -5'
20411 3' -53 NC_004688.1 + 75450 0.66 0.936797
Target:  5'- cCGGAAAGG-UgGGGCCcGUCGAaUCCg -3'
miRNA:   3'- -GCUUUUCCuAgUCCGGcCGGUUgAGG- -5'
20411 3' -53 NC_004688.1 + 29534 0.66 0.936797
Target:  5'- gCGcAGAGug-CGGGCCacgucgucgaGGCCAAUUCCg -3'
miRNA:   3'- -GCuUUUCcuaGUCCGG----------CCGGUUGAGG- -5'
20411 3' -53 NC_004688.1 + 75348 0.67 0.93163
Target:  5'- gCGAGAAGGAUguugccgaucgcCAGGUCGucGCCA--UCCu -3'
miRNA:   3'- -GCUUUUCCUA------------GUCCGGC--CGGUugAGG- -5'
20411 3' -53 NC_004688.1 + 31293 0.67 0.93163
Target:  5'- cCGGAGgcGGGGucguUCAGGCgGGCaauCAGgUCCa -3'
miRNA:   3'- -GCUUU--UCCU----AGUCCGgCCG---GUUgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.