miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20412 5' -52.3 NC_004688.1 + 4922 1.11 0.003506
Target:  5'- gGGCCCAUAAACGCGAUCGCCAUCGACc -3'
miRNA:   3'- -CCGGGUAUUUGCGCUAGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 109429 0.79 0.367555
Target:  5'- cGCCCGUGGGCGuCGAUCGCCgaaugGUgGACc -3'
miRNA:   3'- cCGGGUAUUUGC-GCUAGCGG-----UAgCUG- -5'
20412 5' -52.3 NC_004688.1 + 5508 0.73 0.66493
Target:  5'- uGGCCCGU-GACGC---CGCCGUCGGa -3'
miRNA:   3'- -CCGGGUAuUUGCGcuaGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 44152 0.73 0.686105
Target:  5'- gGGCCCu--GACGgGGUUGCCGUacagaaucaccgCGACg -3'
miRNA:   3'- -CCGGGuauUUGCgCUAGCGGUA------------GCUG- -5'
20412 5' -52.3 NC_004688.1 + 13515 0.73 0.686105
Target:  5'- aGGCCU----GCGCGA-CGUCGUUGACg -3'
miRNA:   3'- -CCGGGuauuUGCGCUaGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 7378 0.73 0.690319
Target:  5'- uGGCCCcc--GgGCGAUCGCCGugcauggcccaguccUCGGCa -3'
miRNA:   3'- -CCGGGuauuUgCGCUAGCGGU---------------AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 25246 0.73 0.696624
Target:  5'- cGCgCCAUAGACGUuugGAUCGCUAagGACc -3'
miRNA:   3'- cCG-GGUAUUUGCG---CUAGCGGUagCUG- -5'
20412 5' -52.3 NC_004688.1 + 46744 0.72 0.72779
Target:  5'- gGGCCCugaucgccGGCGCGAUgGCCAccaaccgcUUGACg -3'
miRNA:   3'- -CCGGGuau-----UUGCGCUAgCGGU--------AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 67006 0.72 0.734957
Target:  5'- aGGCCCcccuccucguauucGUAAACGUagucggGAUUGCCcgCGGCg -3'
miRNA:   3'- -CCGGG--------------UAUUUGCG------CUAGCGGuaGCUG- -5'
20412 5' -52.3 NC_004688.1 + 49399 0.72 0.738013
Target:  5'- cGGCCCAcgagaaugGGGCGUuccauGUCGCCGUUGGCc -3'
miRNA:   3'- -CCGGGUa-------UUUGCGc----UAGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 91863 0.71 0.787419
Target:  5'- cGGaCCCAUucgagggucCGCGAUUGCCAgccCGGCu -3'
miRNA:   3'- -CC-GGGUAuuu------GCGCUAGCGGUa--GCUG- -5'
20412 5' -52.3 NC_004688.1 + 43439 0.71 0.795946
Target:  5'- aGCCCAgGGACGCGGagaUCcgucacccuggacGCCGUCGAUc -3'
miRNA:   3'- cCGGGUaUUUGCGCU---AG-------------CGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 23638 0.7 0.815324
Target:  5'- uGGUCCA-GAugGC-AUCGCCAagCGACu -3'
miRNA:   3'- -CCGGGUaUUugCGcUAGCGGUa-GCUG- -5'
20412 5' -52.3 NC_004688.1 + 53257 0.7 0.815324
Target:  5'- cGCCCGUGAgGCGCaGGugucgcUCGCCA-CGGCg -3'
miRNA:   3'- cCGGGUAUU-UGCG-CU------AGCGGUaGCUG- -5'
20412 5' -52.3 NC_004688.1 + 28509 0.7 0.824276
Target:  5'- gGGUCUugAUGAGCGCcaccUgGCCAUCGGCg -3'
miRNA:   3'- -CCGGG--UAUUUGCGcu--AgCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 24805 0.7 0.824276
Target:  5'- aGGCCgCGcgAGAUGCcgaGGUCGUCAUCGAg -3'
miRNA:   3'- -CCGG-GUa-UUUGCG---CUAGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 71531 0.7 0.840757
Target:  5'- cGCUgGUAGACGCGG-CGCUugcacucauccacGUCGGCg -3'
miRNA:   3'- cCGGgUAUUUGCGCUaGCGG-------------UAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 48557 0.7 0.841604
Target:  5'- gGGCCCGUggggGAACGuCGAgguguucCGCCcgUGACc -3'
miRNA:   3'- -CCGGGUA----UUUGC-GCUa------GCGGuaGCUG- -5'
20412 5' -52.3 NC_004688.1 + 10076 0.7 0.841604
Target:  5'- uGGCgCCGUG---GCGAUCGCCugacgcUCGGCc -3'
miRNA:   3'- -CCG-GGUAUuugCGCUAGCGGu-----AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 59309 0.7 0.849962
Target:  5'- uGCCCG---ACGCGAUggcCGCCGcCGGCu -3'
miRNA:   3'- cCGGGUauuUGCGCUA---GCGGUaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.