miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20412 5' -52.3 NC_004688.1 + 1007 0.67 0.941959
Target:  5'- gGGCUaagaCAUGcGgGCGAUaacccgGCCGUCGACa -3'
miRNA:   3'- -CCGG----GUAUuUgCGCUAg-----CGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 4080 0.69 0.893302
Target:  5'- uGCCCcacaacuccgcggcGUAGGCGCGcAUCGUC-UCGAUg -3'
miRNA:   3'- cCGGG--------------UAUUUGCGC-UAGCGGuAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 4922 1.11 0.003506
Target:  5'- gGGCCCAUAAACGCGAUCGCCAUCGACc -3'
miRNA:   3'- -CCGGGUAUUUGCGCUAGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 5508 0.73 0.66493
Target:  5'- uGGCCCGU-GACGC---CGCCGUCGGa -3'
miRNA:   3'- -CCGGGUAuUUGCGcuaGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 5646 0.69 0.887685
Target:  5'- -aCCCgGUAGACGCGGgccuuaugcUCGCCGuucagcaUCGACa -3'
miRNA:   3'- ccGGG-UAUUUGCGCU---------AGCGGU-------AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 5738 0.67 0.951031
Target:  5'- gGGCCCGgguGACGCGGcCGaggggCGGCa -3'
miRNA:   3'- -CCGGGUau-UUGCGCUaGCggua-GCUG- -5'
20412 5' -52.3 NC_004688.1 + 7220 0.67 0.93704
Target:  5'- aGCCCAUugcaaAGACgGCGA-CGCCAgCGAg -3'
miRNA:   3'- cCGGGUA-----UUUG-CGCUaGCGGUaGCUg -5'
20412 5' -52.3 NC_004688.1 + 7378 0.73 0.690319
Target:  5'- uGGCCCcc--GgGCGAUCGCCGugcauggcccaguccUCGGCa -3'
miRNA:   3'- -CCGGGuauuUgCGCUAGCGGU---------------AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 7660 0.69 0.881178
Target:  5'- aGUCCggGUGGAUcgGCauGAUCGCCGUCGGCc -3'
miRNA:   3'- cCGGG--UAUUUG--CG--CUAGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 10076 0.7 0.841604
Target:  5'- uGGCgCCGUG---GCGAUCGCCugacgcUCGGCc -3'
miRNA:   3'- -CCG-GGUAUuugCGCUAGCGGu-----AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 10452 0.66 0.955189
Target:  5'- cGGUCCAggu-CGCGGuauuccUCGCCGaccUUGGCa -3'
miRNA:   3'- -CCGGGUauuuGCGCU------AGCGGU---AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 10996 0.67 0.941479
Target:  5'- gGGCuCCAggAAGCGCGAggugUGCacacgcuggaucgCGUCGGCg -3'
miRNA:   3'- -CCG-GGUa-UUUGCGCUa---GCG-------------GUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 11030 0.69 0.866027
Target:  5'- aGGCCCAacGACGCGggUGCaucaCGAUg -3'
miRNA:   3'- -CCGGGUauUUGCGCuaGCGgua-GCUG- -5'
20412 5' -52.3 NC_004688.1 + 11397 0.66 0.966207
Target:  5'- cGGUgCCGUcAGCGCGGU-GCCAcCGAUc -3'
miRNA:   3'- -CCG-GGUAuUUGCGCUAgCGGUaGCUG- -5'
20412 5' -52.3 NC_004688.1 + 11737 0.69 0.895368
Target:  5'- aGGUUCG---AUGCGGUCGUCGUCGuCa -3'
miRNA:   3'- -CCGGGUauuUGCGCUAGCGGUAGCuG- -5'
20412 5' -52.3 NC_004688.1 + 13515 0.73 0.686105
Target:  5'- aGGCCU----GCGCGA-CGUCGUUGACg -3'
miRNA:   3'- -CCGGGuauuUGCGCUaGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 13581 0.68 0.90143
Target:  5'- uGGCguauCCGUAGACGUguggaucGAUCGCU-UCGGCg -3'
miRNA:   3'- -CCG----GGUAUUUGCG-------CUAGCGGuAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 14769 0.67 0.951031
Target:  5'- cGCCUagucGUGAACGguucacCGGUCGCCAUaucccccgCGACa -3'
miRNA:   3'- cCGGG----UAUUUGC------GCUAGCGGUA--------GCUG- -5'
20412 5' -52.3 NC_004688.1 + 16900 0.68 0.920729
Target:  5'- gGGCCCAUcAAcCGCGAcgaCGUgGUCGGa -3'
miRNA:   3'- -CCGGGUAuUU-GCGCUa--GCGgUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 17640 0.69 0.895368
Target:  5'- uGGCCCAUucGgGCGAgcUCGgcggcaacaUCGUCGGCg -3'
miRNA:   3'- -CCGGGUAuuUgCGCU--AGC---------GGUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.