miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20412 5' -52.3 NC_004688.1 + 109429 0.79 0.367555
Target:  5'- cGCCCGUGGGCGuCGAUCGCCgaaugGUgGACc -3'
miRNA:   3'- cCGGGUAUUUGC-GCUAGCGG-----UAgCUG- -5'
20412 5' -52.3 NC_004688.1 + 105509 0.66 0.962772
Target:  5'- cGGCCCgAUGAAcCGCaaGcgCGCCAUgaaguuugcCGGCg -3'
miRNA:   3'- -CCGGG-UAUUU-GCG--CuaGCGGUA---------GCUG- -5'
20412 5' -52.3 NC_004688.1 + 102827 0.66 0.969413
Target:  5'- uGGCgaUCGUGAGCGCuAUUGCCGaagaaUUGGCg -3'
miRNA:   3'- -CCG--GGUAUUUGCGcUAGCGGU-----AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 101358 0.69 0.858105
Target:  5'- cGCUCucuGACGCcgacaaGGUCGCCAUCGuACg -3'
miRNA:   3'- cCGGGuauUUGCG------CUAGCGGUAGC-UG- -5'
20412 5' -52.3 NC_004688.1 + 91863 0.71 0.787419
Target:  5'- cGGaCCCAUucgagggucCGCGAUUGCCAgccCGGCu -3'
miRNA:   3'- -CC-GGGUAuuu------GCGCUAGCGGUa--GCUG- -5'
20412 5' -52.3 NC_004688.1 + 91170 0.66 0.959101
Target:  5'- aGCCCuc-GAUGauGUCGCCAacaUCGGCa -3'
miRNA:   3'- cCGGGuauUUGCgcUAGCGGU---AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 89517 0.69 0.895368
Target:  5'- uGGUCguUGAACuGCc--CGCCGUCGACa -3'
miRNA:   3'- -CCGGguAUUUG-CGcuaGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 89478 0.69 0.858105
Target:  5'- aGGCgCAUGAAUuCGGUCGuaCCGUCGAg -3'
miRNA:   3'- -CCGgGUAUUUGcGCUAGC--GGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 87914 0.67 0.941959
Target:  5'- aGGCCCGcuccagGGAUGCGA-CGCgGuuuUCGGCc -3'
miRNA:   3'- -CCGGGUa-----UUUGCGCUaGCGgU---AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 82572 0.66 0.955189
Target:  5'- cGGCgUCGUAGAUGCGcgcCGCCAgcUgGACg -3'
miRNA:   3'- -CCG-GGUAUUUGCGCua-GCGGU--AgCUG- -5'
20412 5' -52.3 NC_004688.1 + 80253 0.7 0.849962
Target:  5'- uGGUUCAUAAucuCgGCGuAUCGCCGgUCGGCg -3'
miRNA:   3'- -CCGGGUAUUu--G-CGC-UAGCGGU-AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 78763 0.66 0.969413
Target:  5'- uGCCCAUAAACacucCGAgucggUGCCccagAUCGGCu -3'
miRNA:   3'- cCGGGUAUUUGc---GCUa----GCGG----UAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 77220 0.67 0.948416
Target:  5'- aGCUCGUGGGCGCGGUaucggacgauggcggCGCCGaUGAUc -3'
miRNA:   3'- cCGGGUAUUUGCGCUA---------------GCGGUaGCUG- -5'
20412 5' -52.3 NC_004688.1 + 76957 0.69 0.881178
Target:  5'- -cCCCAUcugAAGCGC--UCGCCAUCGGg -3'
miRNA:   3'- ccGGGUA---UUUGCGcuAGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 76811 0.68 0.90856
Target:  5'- uGGCCgaaggCGUAAuaGCGGUCGCCAUCc-- -3'
miRNA:   3'- -CCGG-----GUAUUugCGCUAGCGGUAGcug -5'
20412 5' -52.3 NC_004688.1 + 75439 0.69 0.888396
Target:  5'- gGGCCCGUcgaauccgguAAugGCGAcaccgggcUCGUUGUCGAg -3'
miRNA:   3'- -CCGGGUA----------UUugCGCU--------AGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 73927 0.69 0.857301
Target:  5'- cGGCCgcgAGGCGUucgGAgucaaucUCGCCGUCGGCg -3'
miRNA:   3'- -CCGGguaUUUGCG---CU-------AGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 71531 0.7 0.840757
Target:  5'- cGCUgGUAGACGCGG-CGCUugcacucauccacGUCGGCg -3'
miRNA:   3'- cCGGgUAUUUGCGCUaGCGG-------------UAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 71158 0.69 0.881178
Target:  5'- gGGCgCCGgGGGCGCGuccaGCCAUuCGGCu -3'
miRNA:   3'- -CCG-GGUaUUUGCGCuag-CGGUA-GCUG- -5'
20412 5' -52.3 NC_004688.1 + 67006 0.72 0.734957
Target:  5'- aGGCCCcccuccucguauucGUAAACGUagucggGAUUGCCcgCGGCg -3'
miRNA:   3'- -CCGGG--------------UAUUUGCG------CUAGCGGuaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.