miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20412 5' -52.3 NC_004688.1 + 18348 0.68 0.90856
Target:  5'- uGGCCgCcgAAcuucACGCGAUCGCCAcCaGCc -3'
miRNA:   3'- -CCGG-GuaUU----UGCGCUAGCGGUaGcUG- -5'
20412 5' -52.3 NC_004688.1 + 20527 0.68 0.914774
Target:  5'- gGGCCU-UGAugGUGAU-GCCAUCGu- -3'
miRNA:   3'- -CCGGGuAUUugCGCUAgCGGUAGCug -5'
20412 5' -52.3 NC_004688.1 + 20699 0.69 0.895368
Target:  5'- gGGaaCGUcuGCGCGAaguaguugUCGCCGUCGAa -3'
miRNA:   3'- -CCggGUAuuUGCGCU--------AGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 21087 0.66 0.966207
Target:  5'- uGGCCUu--GACGCGGaacuuccagcUCGCCGaagaggUGACg -3'
miRNA:   3'- -CCGGGuauUUGCGCU----------AGCGGUa-----GCUG- -5'
20412 5' -52.3 NC_004688.1 + 21145 0.66 0.969413
Target:  5'- aGGCCgAUAAcCGCGGagGCaGUCGGg -3'
miRNA:   3'- -CCGGgUAUUuGCGCUagCGgUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 22898 0.66 0.959101
Target:  5'- uGCCgAU-GACGCccaGGUCGCCGccgCGGCg -3'
miRNA:   3'- cCGGgUAuUUGCG---CUAGCGGUa--GCUG- -5'
20412 5' -52.3 NC_004688.1 + 23638 0.7 0.815324
Target:  5'- uGGUCCA-GAugGC-AUCGCCAagCGACu -3'
miRNA:   3'- -CCGGGUaUUugCGcUAGCGGUa-GCUG- -5'
20412 5' -52.3 NC_004688.1 + 24805 0.7 0.824276
Target:  5'- aGGCCgCGcgAGAUGCcgaGGUCGUCAUCGAg -3'
miRNA:   3'- -CCGG-GUa-UUUGCG---CUAGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 25246 0.73 0.696624
Target:  5'- cGCgCCAUAGACGUuugGAUCGCUAagGACc -3'
miRNA:   3'- cCG-GGUAUUUGCG---CUAGCGGUagCUG- -5'
20412 5' -52.3 NC_004688.1 + 26028 0.66 0.969102
Target:  5'- aGGCCCGUGGGCauaccggugcugaGCGGUCcgccuGCCAUacccccgGGCa -3'
miRNA:   3'- -CCGGGUAUUUG-------------CGCUAG-----CGGUAg------CUG- -5'
20412 5' -52.3 NC_004688.1 + 28509 0.7 0.824276
Target:  5'- gGGUCUugAUGAGCGCcaccUgGCCAUCGGCg -3'
miRNA:   3'- -CCGGG--UAUUUGCGcu--AgCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 30285 0.7 0.849962
Target:  5'- cGCU--UGAGCGCGAaaaUGCCAUCGAUg -3'
miRNA:   3'- cCGGguAUUUGCGCUa--GCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 32152 0.66 0.966207
Target:  5'- uGCCCcgAccgcAGCGCcuucaacgUGCCAUCGGCa -3'
miRNA:   3'- cCGGGuaU----UUGCGcua-----GCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 35552 0.66 0.959101
Target:  5'- -cUCCAUu--CGCcgGAUCGCCAUCGuGCg -3'
miRNA:   3'- ccGGGUAuuuGCG--CUAGCGGUAGC-UG- -5'
20412 5' -52.3 NC_004688.1 + 41924 0.66 0.966207
Target:  5'- uGCCCGgccaGAACG-GAUCGCgguaGUUGGCg -3'
miRNA:   3'- cCGGGUa---UUUGCgCUAGCGg---UAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 42005 0.69 0.858105
Target:  5'- cGGCCUGggcGGCGgGGUCGCCGguccgGACg -3'
miRNA:   3'- -CCGGGUau-UUGCgCUAGCGGUag---CUG- -5'
20412 5' -52.3 NC_004688.1 + 43439 0.71 0.795946
Target:  5'- aGCCCAgGGACGCGGagaUCcgucacccuggacGCCGUCGAUc -3'
miRNA:   3'- cCGGGUaUUUGCGCU---AG-------------CGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 43802 0.67 0.941959
Target:  5'- cGGCCg--GAACGUaGAacUCGCCGUUGAg -3'
miRNA:   3'- -CCGGguaUUUGCG-CU--AGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 44152 0.73 0.686105
Target:  5'- gGGCCCu--GACGgGGUUGCCGUacagaaucaccgCGACg -3'
miRNA:   3'- -CCGGGuauUUGCgCUAGCGGUA------------GCUG- -5'
20412 5' -52.3 NC_004688.1 + 46744 0.72 0.72779
Target:  5'- gGGCCCugaucgccGGCGCGAUgGCCAccaaccgcUUGACg -3'
miRNA:   3'- -CCGGGuau-----UUGCGCUAgCGGU--------AGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.