miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20412 5' -52.3 NC_004688.1 + 59309 0.7 0.849962
Target:  5'- uGCCCG---ACGCGAUggcCGCCGcCGGCu -3'
miRNA:   3'- cCGGGUauuUGCGCUA---GCGGUaGCUG- -5'
20412 5' -52.3 NC_004688.1 + 80253 0.7 0.849962
Target:  5'- uGGUUCAUAAucuCgGCGuAUCGCCGgUCGGCg -3'
miRNA:   3'- -CCGGGUAUUu--G-CGC-UAGCGGU-AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 73927 0.69 0.857301
Target:  5'- cGGCCgcgAGGCGUucgGAgucaaucUCGCCGUCGGCg -3'
miRNA:   3'- -CCGGguaUUUGCG---CU-------AGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 89478 0.69 0.858105
Target:  5'- aGGCgCAUGAAUuCGGUCGuaCCGUCGAg -3'
miRNA:   3'- -CCGgGUAUUUGcGCUAGC--GGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 42005 0.69 0.858105
Target:  5'- cGGCCUGggcGGCGgGGUCGCCGguccgGACg -3'
miRNA:   3'- -CCGGGUau-UUGCgCUAGCGGUag---CUG- -5'
20412 5' -52.3 NC_004688.1 + 101358 0.69 0.858105
Target:  5'- cGCUCucuGACGCcgacaaGGUCGCCAUCGuACg -3'
miRNA:   3'- cCGGGuauUUGCG------CUAGCGGUAGC-UG- -5'
20412 5' -52.3 NC_004688.1 + 11030 0.69 0.866027
Target:  5'- aGGCCCAacGACGCGggUGCaucaCGAUg -3'
miRNA:   3'- -CCGGGUauUUGCGCuaGCGgua-GCUG- -5'
20412 5' -52.3 NC_004688.1 + 76957 0.69 0.881178
Target:  5'- -cCCCAUcugAAGCGC--UCGCCAUCGGg -3'
miRNA:   3'- ccGGGUA---UUUGCGcuAGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 71158 0.69 0.881178
Target:  5'- gGGCgCCGgGGGCGCGuccaGCCAUuCGGCu -3'
miRNA:   3'- -CCG-GGUaUUUGCGCuag-CGGUA-GCUG- -5'
20412 5' -52.3 NC_004688.1 + 7660 0.69 0.881178
Target:  5'- aGUCCggGUGGAUcgGCauGAUCGCCGUCGGCc -3'
miRNA:   3'- cCGGG--UAUUUG--CG--CUAGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 5646 0.69 0.887685
Target:  5'- -aCCCgGUAGACGCGGgccuuaugcUCGCCGuucagcaUCGACa -3'
miRNA:   3'- ccGGG-UAUUUGCGCU---------AGCGGU-------AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 75439 0.69 0.888396
Target:  5'- gGGCCCGUcgaauccgguAAugGCGAcaccgggcUCGUUGUCGAg -3'
miRNA:   3'- -CCGGGUA----------UUugCGCU--------AGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 51854 0.69 0.888396
Target:  5'- uGGCgUAUGGACcuGCGAaUGCgGUCGGCa -3'
miRNA:   3'- -CCGgGUAUUUG--CGCUaGCGgUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 4080 0.69 0.893302
Target:  5'- uGCCCcacaacuccgcggcGUAGGCGCGcAUCGUC-UCGAUg -3'
miRNA:   3'- cCGGG--------------UAUUUGCGC-UAGCGGuAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 17640 0.69 0.895368
Target:  5'- uGGCCCAUucGgGCGAgcUCGgcggcaacaUCGUCGGCg -3'
miRNA:   3'- -CCGGGUAuuUgCGCU--AGC---------GGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 89517 0.69 0.895368
Target:  5'- uGGUCguUGAACuGCc--CGCCGUCGACa -3'
miRNA:   3'- -CCGGguAUUUG-CGcuaGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 11737 0.69 0.895368
Target:  5'- aGGUUCG---AUGCGGUCGUCGUCGuCa -3'
miRNA:   3'- -CCGGGUauuUGCGCUAGCGGUAGCuG- -5'
20412 5' -52.3 NC_004688.1 + 20699 0.69 0.895368
Target:  5'- gGGaaCGUcuGCGCGAaguaguugUCGCCGUCGAa -3'
miRNA:   3'- -CCggGUAuuUGCGCU--------AGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 13581 0.68 0.90143
Target:  5'- uGGCguauCCGUAGACGUguggaucGAUCGCU-UCGGCg -3'
miRNA:   3'- -CCG----GGUAUUUGCG-------CUAGCGGuAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 18348 0.68 0.90856
Target:  5'- uGGCCgCcgAAcuucACGCGAUCGCCAcCaGCc -3'
miRNA:   3'- -CCGG-GuaUU----UGCGCUAGCGGUaGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.