miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20412 5' -52.3 NC_004688.1 + 14769 0.67 0.951031
Target:  5'- cGCCUagucGUGAACGguucacCGGUCGCCAUaucccccgCGACa -3'
miRNA:   3'- cCGGG----UAUUUGC------GCUAGCGGUA--------GCUG- -5'
20412 5' -52.3 NC_004688.1 + 64810 0.67 0.948858
Target:  5'- cGCCCAcaucagcgugaaggcGAGCGCguccuuacuuggguuGAUCGCCAgaUCGACc -3'
miRNA:   3'- cCGGGUa--------------UUUGCG---------------CUAGCGGU--AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 77220 0.67 0.948416
Target:  5'- aGCUCGUGGGCGCGGUaucggacgauggcggCGCCGaUGAUc -3'
miRNA:   3'- cCGGGUAUUUGCGCUA---------------GCGGUaGCUG- -5'
20412 5' -52.3 NC_004688.1 + 87914 0.67 0.941959
Target:  5'- aGGCCCGcuccagGGAUGCGA-CGCgGuuuUCGGCc -3'
miRNA:   3'- -CCGGGUa-----UUUGCGCUaGCGgU---AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 43802 0.67 0.941959
Target:  5'- cGGCCg--GAACGUaGAacUCGCCGUUGAg -3'
miRNA:   3'- -CCGGguaUUUGCG-CU--AGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 1007 0.67 0.941959
Target:  5'- gGGCUaagaCAUGcGgGCGAUaacccgGCCGUCGACa -3'
miRNA:   3'- -CCGG----GUAUuUgCGCUAg-----CGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 52816 0.67 0.941959
Target:  5'- uGGCCCAaugcuugcUGGcCGCGcUCGCCccAUCGGa -3'
miRNA:   3'- -CCGGGU--------AUUuGCGCuAGCGG--UAGCUg -5'
20412 5' -52.3 NC_004688.1 + 59978 0.67 0.941959
Target:  5'- cGGCCCGaGggUGCcaccgCGCCggCGACc -3'
miRNA:   3'- -CCGGGUaUuuGCGcua--GCGGuaGCUG- -5'
20412 5' -52.3 NC_004688.1 + 10996 0.67 0.941479
Target:  5'- gGGCuCCAggAAGCGCGAggugUGCacacgcuggaucgCGUCGGCg -3'
miRNA:   3'- -CCG-GGUa-UUUGCGCUa---GCG-------------GUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 7220 0.67 0.93704
Target:  5'- aGCCCAUugcaaAGACgGCGA-CGCCAgCGAg -3'
miRNA:   3'- cCGGGUA-----UUUG-CGCUaGCGGUaGCUg -5'
20412 5' -52.3 NC_004688.1 + 48976 0.68 0.926426
Target:  5'- cGCCCAgcu-CGUGGagaugcUCGgCGUCGACg -3'
miRNA:   3'- cCGGGUauuuGCGCU------AGCgGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 16900 0.68 0.920729
Target:  5'- gGGCCCAUcAAcCGCGAcgaCGUgGUCGGa -3'
miRNA:   3'- -CCGGGUAuUU-GCGCUa--GCGgUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 20527 0.68 0.914774
Target:  5'- gGGCCU-UGAugGUGAU-GCCAUCGu- -3'
miRNA:   3'- -CCGGGuAUUugCGCUAgCGGUAGCug -5'
20412 5' -52.3 NC_004688.1 + 18348 0.68 0.90856
Target:  5'- uGGCCgCcgAAcuucACGCGAUCGCCAcCaGCc -3'
miRNA:   3'- -CCGG-GuaUU----UGCGCUAGCGGUaGcUG- -5'
20412 5' -52.3 NC_004688.1 + 76811 0.68 0.90856
Target:  5'- uGGCCgaaggCGUAAuaGCGGUCGCCAUCc-- -3'
miRNA:   3'- -CCGG-----GUAUUugCGCUAGCGGUAGcug -5'
20412 5' -52.3 NC_004688.1 + 13581 0.68 0.90143
Target:  5'- uGGCguauCCGUAGACGUguggaucGAUCGCU-UCGGCg -3'
miRNA:   3'- -CCG----GGUAUUUGCG-------CUAGCGGuAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 17640 0.69 0.895368
Target:  5'- uGGCCCAUucGgGCGAgcUCGgcggcaacaUCGUCGGCg -3'
miRNA:   3'- -CCGGGUAuuUgCGCU--AGC---------GGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 11737 0.69 0.895368
Target:  5'- aGGUUCG---AUGCGGUCGUCGUCGuCa -3'
miRNA:   3'- -CCGGGUauuUGCGCUAGCGGUAGCuG- -5'
20412 5' -52.3 NC_004688.1 + 20699 0.69 0.895368
Target:  5'- gGGaaCGUcuGCGCGAaguaguugUCGCCGUCGAa -3'
miRNA:   3'- -CCggGUAuuUGCGCU--------AGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 89517 0.69 0.895368
Target:  5'- uGGUCguUGAACuGCc--CGCCGUCGACa -3'
miRNA:   3'- -CCGGguAUUUG-CGcuaGCGGUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.