miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20455 3' -59.1 NC_004688.1 + 38683 0.65 0.724404
Target:  5'- cCGcCGCCGcCGCCgCGGCGGUagguaucAUCGAa -3'
miRNA:   3'- uGCuGUGGU-GCGG-GUCGCCG-------UAGCUg -5'
20455 3' -59.1 NC_004688.1 + 71521 0.66 0.715459
Target:  5'- cGCGGCGcuugcacucauCCACGUCgGcGUGGaCGUCGACu -3'
miRNA:   3'- -UGCUGU-----------GGUGCGGgU-CGCC-GUAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 33579 0.66 0.715459
Target:  5'- uGCu-CACCGCGCaCCcauguGGUGGCGUUGAa -3'
miRNA:   3'- -UGcuGUGGUGCG-GG-----UCGCCGUAGCUg -5'
20455 3' -59.1 NC_004688.1 + 17643 0.66 0.703443
Target:  5'- uCGugGCCcauucgggcgaGCUCGGCGGCAacaucgUCGGCg -3'
miRNA:   3'- uGCugUGGug---------CGGGUCGCCGU------AGCUG- -5'
20455 3' -59.1 NC_004688.1 + 10376 0.66 0.695383
Target:  5'- gGCGGCGCagGCGCUCcuuGGcCGGCucGUCGGCc -3'
miRNA:   3'- -UGCUGUGg-UGCGGG---UC-GCCG--UAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 14162 0.66 0.695383
Target:  5'- aGCGAUACU-CGCCguagcGCGGC-UCGGCg -3'
miRNA:   3'- -UGCUGUGGuGCGGgu---CGCCGuAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 97350 0.66 0.695383
Target:  5'- cCGcCACCACGCUgAacaauGCGGUAUCG-Ca -3'
miRNA:   3'- uGCuGUGGUGCGGgU-----CGCCGUAGCuG- -5'
20455 3' -59.1 NC_004688.1 + 89259 0.66 0.695383
Target:  5'- uCGGCGuCCAU-CUCGGCGGgGUUGACa -3'
miRNA:   3'- uGCUGU-GGUGcGGGUCGCCgUAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 91015 0.66 0.685261
Target:  5'- cACGcCACCACGa-CAGUGGC-UUGGCc -3'
miRNA:   3'- -UGCuGUGGUGCggGUCGCCGuAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 1842 0.66 0.685261
Target:  5'- cGCGguucGCGCCAaGCUUGGUGGCggCGGCg -3'
miRNA:   3'- -UGC----UGUGGUgCGGGUCGCCGuaGCUG- -5'
20455 3' -59.1 NC_004688.1 + 13077 0.66 0.685261
Target:  5'- aGCGGCGCCgugACGUgugaUCGGUGGCGUCuccgugGACa -3'
miRNA:   3'- -UGCUGUGG---UGCG----GGUCGCCGUAG------CUG- -5'
20455 3' -59.1 NC_004688.1 + 15402 0.66 0.685261
Target:  5'- -gGAuCACCGCGCaaaaaGGCAUCGGCu -3'
miRNA:   3'- ugCU-GUGGUGCGggucgCCGUAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 44345 0.66 0.685261
Target:  5'- uCGGCACCGaccgggGCCgCAGCguagaggucgccGGCGUUGGCg -3'
miRNA:   3'- uGCUGUGGUg-----CGG-GUCG------------CCGUAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 28735 0.66 0.675095
Target:  5'- uCGAgGCCGCGCgCAGggacCGGCuUUGACc -3'
miRNA:   3'- uGCUgUGGUGCGgGUC----GCCGuAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 59265 0.66 0.675095
Target:  5'- uACGACACC--GUUguGCGGCAugagcccgaccUCGGCa -3'
miRNA:   3'- -UGCUGUGGugCGGguCGCCGU-----------AGCUG- -5'
20455 3' -59.1 NC_004688.1 + 98535 0.66 0.675095
Target:  5'- gGCG-CGCCGCauGCCCAccauugcauGCGGCGUCcgucgaGGCg -3'
miRNA:   3'- -UGCuGUGGUG--CGGGU---------CGCCGUAG------CUG- -5'
20455 3' -59.1 NC_004688.1 + 53651 0.67 0.664893
Target:  5'- uGCGGguCC--GCCCAGgcucCGGCAUUGACg -3'
miRNA:   3'- -UGCUguGGugCGGGUC----GCCGUAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 57923 0.67 0.654665
Target:  5'- -gGGCugCugGCCUguGGCGGUGUaGGCg -3'
miRNA:   3'- ugCUGugGugCGGG--UCGCCGUAgCUG- -5'
20455 3' -59.1 NC_004688.1 + 65705 0.67 0.654665
Target:  5'- gGCaACGCCGggguCGCCCGgcgccuagcuuGCGGCcUCGGCg -3'
miRNA:   3'- -UGcUGUGGU----GCGGGU-----------CGCCGuAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 83518 0.67 0.654665
Target:  5'- --cGCAgCGCGUCCAGCG-CAUCGGg -3'
miRNA:   3'- ugcUGUgGUGCGGGUCGCcGUAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.