miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20489 3' -55.6 NC_004688.1 + 65594 0.66 0.878507
Target:  5'- cGGCGGgcCGUAC-CccGCC--UGCCGCa -3'
miRNA:   3'- aCCGCC--GCAUGaGuuUGGucACGGCG- -5'
20489 3' -55.6 NC_004688.1 + 56035 0.66 0.878507
Target:  5'- cGG-GGCGUGCggAAucuCCuGuUGCCGCg -3'
miRNA:   3'- aCCgCCGCAUGagUUu--GGuC-ACGGCG- -5'
20489 3' -55.6 NC_004688.1 + 12089 0.66 0.871083
Target:  5'- gUGGCuucGCGggUUUGAGCCucGGUGUCGCg -3'
miRNA:   3'- -ACCGc--CGCauGAGUUUGG--UCACGGCG- -5'
20489 3' -55.6 NC_004688.1 + 28832 0.66 0.871083
Target:  5'- cGGCcaGCGc-CUCAugGGCguCAGUGCCGCg -3'
miRNA:   3'- aCCGc-CGCauGAGU--UUG--GUCACGGCG- -5'
20489 3' -55.6 NC_004688.1 + 12849 0.66 0.871083
Target:  5'- gGGUGGCcUugUCGGugCcGUGCCu- -3'
miRNA:   3'- aCCGCCGcAugAGUUugGuCACGGcg -5'
20489 3' -55.6 NC_004688.1 + 6033 0.66 0.871083
Target:  5'- cGGuCGGCGg--UCAAAcCCAG-GCCGg -3'
miRNA:   3'- aCC-GCCGCaugAGUUU-GGUCaCGGCg -5'
20489 3' -55.6 NC_004688.1 + 97003 0.66 0.863434
Target:  5'- gUGGUGGCGaUAgUCgAAACCGa-GCCGUu -3'
miRNA:   3'- -ACCGCCGC-AUgAG-UUUGGUcaCGGCG- -5'
20489 3' -55.6 NC_004688.1 + 10378 0.66 0.863434
Target:  5'- gUGGCGGCGcaggcGCUCcuuGGCCGGcucgucggccaUGCCa- -3'
miRNA:   3'- -ACCGCCGCa----UGAGu--UUGGUC-----------ACGGcg -5'
20489 3' -55.6 NC_004688.1 + 7720 0.66 0.863434
Target:  5'- -uGCGGUagaccgGCUCGAuCCAGUcGCCGUc -3'
miRNA:   3'- acCGCCGca----UGAGUUuGGUCA-CGGCG- -5'
20489 3' -55.6 NC_004688.1 + 65394 0.66 0.862657
Target:  5'- aGGUGGCccAgUCGAugCcggcuucGGUGCCGUg -3'
miRNA:   3'- aCCGCCGcaUgAGUUugG-------UCACGGCG- -5'
20489 3' -55.6 NC_004688.1 + 89891 0.66 0.847484
Target:  5'- gGuGCGGCG-GCUCGccgccuGGCCGGgGuCCGCu -3'
miRNA:   3'- aC-CGCCGCaUGAGU------UUGGUCaC-GGCG- -5'
20489 3' -55.6 NC_004688.1 + 60066 0.66 0.847484
Target:  5'- aUGuaGGUGUuugcCUCGGACCGcucGUGaCCGCg -3'
miRNA:   3'- -ACcgCCGCAu---GAGUUUGGU---CAC-GGCG- -5'
20489 3' -55.6 NC_004688.1 + 37080 0.66 0.839197
Target:  5'- aUGGCGGCccauGUGCccgaCGAGCUuGUcGCCGUg -3'
miRNA:   3'- -ACCGCCG----CAUGa---GUUUGGuCA-CGGCG- -5'
20489 3' -55.6 NC_004688.1 + 14826 0.66 0.839197
Target:  5'- cGGCGGCauuaaacCUCGcGACUGGgccUGCCGCa -3'
miRNA:   3'- aCCGCCGcau----GAGU-UUGGUC---ACGGCG- -5'
20489 3' -55.6 NC_004688.1 + 51757 0.66 0.839197
Target:  5'- uUGGCGGU--GCUgGAugCGGagaagGCUGCg -3'
miRNA:   3'- -ACCGCCGcaUGAgUUugGUCa----CGGCG- -5'
20489 3' -55.6 NC_004688.1 + 81111 0.66 0.839197
Target:  5'- gGGCcaGCGUcCUUGAGCC-GUGCCGa -3'
miRNA:   3'- aCCGc-CGCAuGAGUUUGGuCACGGCg -5'
20489 3' -55.6 NC_004688.1 + 17576 0.67 0.830712
Target:  5'- aGGaGGCGcGCUC-AGCCAGgagcGCgGCg -3'
miRNA:   3'- aCCgCCGCaUGAGuUUGGUCa---CGgCG- -5'
20489 3' -55.6 NC_004688.1 + 45080 0.67 0.830712
Target:  5'- gUGGCGGCcUGCUUAGcguUguGgcGCCGCg -3'
miRNA:   3'- -ACCGCCGcAUGAGUUu--GguCa-CGGCG- -5'
20489 3' -55.6 NC_004688.1 + 102798 0.67 0.829853
Target:  5'- uUGGCGGCGcACUUcccuGAcuacagcguccgcGCCAGUGgcCCGUu -3'
miRNA:   3'- -ACCGCCGCaUGAG----UU-------------UGGUCAC--GGCG- -5'
20489 3' -55.6 NC_004688.1 + 46524 0.67 0.825529
Target:  5'- cGGCguGGCGUGCgucccggucgacggUAAGCCGaucGCCGCg -3'
miRNA:   3'- aCCG--CCGCAUGa-------------GUUUGGUca-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.