miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20496 3' -63.9 NC_004688.1 + 60827 0.66 0.521264
Target:  5'- uGAUGGCguaGCC-CUGGCcGCGGCgGu -3'
miRNA:   3'- gCUACCGg--CGGcGGCCGaUGCCGgCc -5'
20496 3' -63.9 NC_004688.1 + 89888 0.66 0.521264
Target:  5'- gCGgcGGCuCGCCGCCuGGCcGgGGuCCGc -3'
miRNA:   3'- -GCuaCCG-GCGGCGG-CCGaUgCC-GGCc -5'
20496 3' -63.9 NC_004688.1 + 14294 0.66 0.521264
Target:  5'- cCGAUGcGCCccaaucccCCGCCGGCU-CGGUgGu -3'
miRNA:   3'- -GCUAC-CGGc-------GGCGGCCGAuGCCGgCc -5'
20496 3' -63.9 NC_004688.1 + 31487 0.66 0.511903
Target:  5'- aGAacGuuGUCGCgGGCga-GGCCGGg -3'
miRNA:   3'- gCUacCggCGGCGgCCGaugCCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 17628 0.66 0.502611
Target:  5'- gCGAgcucGGCgGCaacauCGUCGGCgcgaucggcGCGGCCGGc -3'
miRNA:   3'- -GCUa---CCGgCG-----GCGGCCGa--------UGCCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 110367 0.66 0.487902
Target:  5'- gCGAUGGCCGCUuaugaagcagugaugGCCaaGCauuCGGCCGc -3'
miRNA:   3'- -GCUACCGGCGG---------------CGGc-CGau-GCCGGCc -5'
20496 3' -63.9 NC_004688.1 + 19073 0.66 0.484256
Target:  5'- uCGAaGGCCGgCGUgGGCguguuCGGCCc- -3'
miRNA:   3'- -GCUaCCGGCgGCGgCCGau---GCCGGcc -5'
20496 3' -63.9 NC_004688.1 + 25419 0.66 0.484256
Target:  5'- cCGG-GGCCGCUGaauCCaGCUACGggcguGCCGGu -3'
miRNA:   3'- -GCUaCCGGCGGC---GGcCGAUGC-----CGGCC- -5'
20496 3' -63.9 NC_004688.1 + 64995 0.66 0.484256
Target:  5'- gGAUaGGCCGauaaUGgCGGCaGCGGCCa- -3'
miRNA:   3'- gCUA-CCGGCg---GCgGCCGaUGCCGGcc -5'
20496 3' -63.9 NC_004688.1 + 75874 0.66 0.484256
Target:  5'- gGcgGGCCccaGCuuCGCgGGCUugGGCCu- -3'
miRNA:   3'- gCuaCCGG---CG--GCGgCCGAugCCGGcc -5'
20496 3' -63.9 NC_004688.1 + 105918 0.66 0.484256
Target:  5'- aGAUGGCCGCagagaugcgCGCCGGCcuccagucgUGGuCCGa -3'
miRNA:   3'- gCUACCGGCG---------GCGGCCGau-------GCC-GGCc -5'
20496 3' -63.9 NC_004688.1 + 27664 0.66 0.475199
Target:  5'- uGAguUGGCCaucgaaGCCgaGCCGGauaGCGGUCGGg -3'
miRNA:   3'- gCU--ACCGG------CGG--CGGCCga-UGCCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 898 0.66 0.475199
Target:  5'- aGGUGaucguuccuGCCGCUGCCGcGCUgACGGuuGc -3'
miRNA:   3'- gCUAC---------CGGCGGCGGC-CGA-UGCCggCc -5'
20496 3' -63.9 NC_004688.1 + 41133 0.66 0.474298
Target:  5'- uGAUGG-CGCCGCCgaaugucGGgaACaGGCCGa -3'
miRNA:   3'- gCUACCgGCGGCGG-------CCgaUG-CCGGCc -5'
20496 3' -63.9 NC_004688.1 + 20905 0.67 0.466227
Target:  5'- ---cGGCCaucUCGCCGGCgaccgcaACGGCCGu -3'
miRNA:   3'- gcuaCCGGc--GGCGGCCGa------UGCCGGCc -5'
20496 3' -63.9 NC_004688.1 + 55928 0.67 0.466227
Target:  5'- uCGAUGucauccuuggcGCUGCCGagcaugaGGUUGCaGGCCGGg -3'
miRNA:   3'- -GCUAC-----------CGGCGGCgg-----CCGAUG-CCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 10878 0.67 0.457344
Target:  5'- gCGGUGGCgCGCaCGCCgacgaccuGGUUGuuCGaGCCGGu -3'
miRNA:   3'- -GCUACCG-GCG-GCGG--------CCGAU--GC-CGGCC- -5'
20496 3' -63.9 NC_004688.1 + 47704 0.67 0.445934
Target:  5'- uGA-GGCCGCuggagugagucaucCGacuacggaccCCGGCgACGGCCGGa -3'
miRNA:   3'- gCUaCCGGCG--------------GC----------GGCCGaUGCCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 16947 0.67 0.439856
Target:  5'- uCGG-GGCCGCUgGCgGGCUucaacACGgcGCCGGg -3'
miRNA:   3'- -GCUaCCGGCGG-CGgCCGA-----UGC--CGGCC- -5'
20496 3' -63.9 NC_004688.1 + 28315 0.67 0.422754
Target:  5'- ---cGGuuGaCCGCCGGCggaaccaGCuGCCGGg -3'
miRNA:   3'- gcuaCCggC-GGCGGCCGa------UGcCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.