miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20543 5' -60.4 NC_004688.1 + 86797 0.66 0.683964
Target:  5'- -cGUCC-CGAacgggaccGCCGGuCCCGGCUUCu -3'
miRNA:   3'- ccCAGGcGCUaa------CGGUC-GGGCCGAGG- -5'
20543 5' -60.4 NC_004688.1 + 58394 0.66 0.683964
Target:  5'- uGGGcaCCGCGGUgugGCUGG-CgGGCUUCg -3'
miRNA:   3'- -CCCa-GGCGCUAa--CGGUCgGgCCGAGG- -5'
20543 5' -60.4 NC_004688.1 + 18090 0.66 0.680973
Target:  5'- uGGGcCCGCGGcaccaccagccGCacuucuuauagagCAGCCgGGCUCCc -3'
miRNA:   3'- -CCCaGGCGCUaa---------CG-------------GUCGGgCCGAGG- -5'
20543 5' -60.4 NC_004688.1 + 24586 0.66 0.663964
Target:  5'- cGGGcgUCGCGAagGUCgAGCgCGGCgcgCCg -3'
miRNA:   3'- -CCCa-GGCGCUaaCGG-UCGgGCCGa--GG- -5'
20543 5' -60.4 NC_004688.1 + 4622 0.66 0.660954
Target:  5'- cGGGUCgagaaugaggccgcaCGCGGcgGCCAggucaaucgcuuccuGCCCGGCagaggauuuagcuUCCg -3'
miRNA:   3'- -CCCAG---------------GCGCUaaCGGU---------------CGGGCCG-------------AGG- -5'
20543 5' -60.4 NC_004688.1 + 102175 0.66 0.653923
Target:  5'- uGGGaaCCGUGGga-UCAGCCCGaggcGCUCCa -3'
miRNA:   3'- -CCCa-GGCGCUaacGGUCGGGC----CGAGG- -5'
20543 5' -60.4 NC_004688.1 + 9427 0.66 0.653923
Target:  5'- cGGUCuCGCGGaa-CCAucGCUCGGCUUCu -3'
miRNA:   3'- cCCAG-GCGCUaacGGU--CGGGCCGAGG- -5'
20543 5' -60.4 NC_004688.1 + 3487 0.66 0.653923
Target:  5'- uGGUCgGCGGcuugcugauggUGCCAGCCgaGGcCUCUu -3'
miRNA:   3'- cCCAGgCGCUa----------ACGGUCGGg-CC-GAGG- -5'
20543 5' -60.4 NC_004688.1 + 51370 0.67 0.623729
Target:  5'- cGGGU-CGCGGUcgcaccggGCCGGUccuaCCGGCUgCu -3'
miRNA:   3'- -CCCAgGCGCUAa-------CGGUCG----GGCCGAgG- -5'
20543 5' -60.4 NC_004688.1 + 76378 0.67 0.623729
Target:  5'- aGGGUCCagaGCGGgaacgggagGcCCAGCCaccaGGUUCUg -3'
miRNA:   3'- -CCCAGG---CGCUaa-------C-GGUCGGg---CCGAGG- -5'
20543 5' -60.4 NC_004688.1 + 9821 0.67 0.623729
Target:  5'- -cGUCCGCGg--GCCcGCCCGGaugUCg -3'
miRNA:   3'- ccCAGGCGCuaaCGGuCGGGCCga-GG- -5'
20543 5' -60.4 NC_004688.1 + 24223 0.67 0.62071
Target:  5'- cGGcGUCCGuCGcgcccguggggaccGUUGCCGguGCCCGGggCCc -3'
miRNA:   3'- -CC-CAGGC-GC--------------UAACGGU--CGGGCCgaGG- -5'
20543 5' -60.4 NC_004688.1 + 28402 0.67 0.603619
Target:  5'- aGGUCCGgGAa-GCCGGgCUGGUcgCCg -3'
miRNA:   3'- cCCAGGCgCUaaCGGUCgGGCCGa-GG- -5'
20543 5' -60.4 NC_004688.1 + 108729 0.67 0.593591
Target:  5'- cGGU-CGCGGUUGCgAGCUgGGaaCCg -3'
miRNA:   3'- cCCAgGCGCUAACGgUCGGgCCgaGG- -5'
20543 5' -60.4 NC_004688.1 + 89792 0.67 0.593591
Target:  5'- cGGGgCCGC----GCCAGCCgggaGGCUUCu -3'
miRNA:   3'- -CCCaGGCGcuaaCGGUCGGg---CCGAGG- -5'
20543 5' -60.4 NC_004688.1 + 5162 0.68 0.557761
Target:  5'- cGGG-CaCGCGGUaGCgguagauguucgaauCGGCCCGGC-CCg -3'
miRNA:   3'- -CCCaG-GCGCUAaCG---------------GUCGGGCCGaGG- -5'
20543 5' -60.4 NC_004688.1 + 52728 0.68 0.553815
Target:  5'- --aUCCGCGAaUGCUggGGgCCGGaCUCCc -3'
miRNA:   3'- cccAGGCGCUaACGG--UCgGGCC-GAGG- -5'
20543 5' -60.4 NC_004688.1 + 27548 0.68 0.543986
Target:  5'- gGGGUCCaGCGGgc-CCGGCCgGGgaUCa -3'
miRNA:   3'- -CCCAGG-CGCUaacGGUCGGgCCgaGG- -5'
20543 5' -60.4 NC_004688.1 + 87926 0.68 0.534215
Target:  5'- --aUCCGCGAccGCaGGCCCG-CUCCa -3'
miRNA:   3'- cccAGGCGCUaaCGgUCGGGCcGAGG- -5'
20543 5' -60.4 NC_004688.1 + 64653 0.69 0.477077
Target:  5'- --cUCCG-GAgaGCCAgugaagggugucGCCCGGCUCCa -3'
miRNA:   3'- cccAGGCgCUaaCGGU------------CGGGCCGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.