miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20543 5' -60.4 NC_004688.1 + 91351 0.7 0.449657
Target:  5'- aGGcCCGCGAUcUGCUugcuGCCgCGGCgCCa -3'
miRNA:   3'- cCCaGGCGCUA-ACGGu---CGG-GCCGaGG- -5'
20543 5' -60.4 NC_004688.1 + 17122 0.71 0.381075
Target:  5'- cGGcGUCCacGCGcagcaGCCAaucGCCCGGCUCUg -3'
miRNA:   3'- -CC-CAGG--CGCuaa--CGGU---CGGGCCGAGG- -5'
20543 5' -60.4 NC_004688.1 + 53657 0.71 0.357219
Target:  5'- uGGGcCUGCGg--GUCcGCCCaGGCUCCg -3'
miRNA:   3'- -CCCaGGCGCuaaCGGuCGGG-CCGAGG- -5'
20543 5' -60.4 NC_004688.1 + 71252 0.71 0.356442
Target:  5'- uGGUCgGCGAUUuCCcgGGCCCGGCggcucuucccgcuUCCg -3'
miRNA:   3'- cCCAGgCGCUAAcGG--UCGGGCCG-------------AGG- -5'
20543 5' -60.4 NC_004688.1 + 87273 0.72 0.312724
Target:  5'- uGGauaCGgGAUUGCC-GCCgGGCUCCa -3'
miRNA:   3'- cCCag-GCgCUAACGGuCGGgCCGAGG- -5'
20543 5' -60.4 NC_004688.1 + 48902 0.74 0.25408
Target:  5'- uGGGUUCGCGGUcccugUGCC-GCggGGCUCCg -3'
miRNA:   3'- -CCCAGGCGCUA-----ACGGuCGggCCGAGG- -5'
20543 5' -60.4 NC_004688.1 + 91851 1.13 0.000472
Target:  5'- aGGGUCCGCGAUUGCCAGCCCGGCUCCu -3'
miRNA:   3'- -CCCAGGCGCUAACGGUCGGGCCGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.